jmacdon/GenomicFeatures: Conveniently import and query gene models
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | M. Carlson, H. Pagès, P. Aboyoun, S. Falcon, M. Morgan, D. Sarkar, M. Lawrence, V. Obenchain |
| Bioconductor views | Annotation Genetics GenomeAnnotation Infrastructure Sequencing |
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| License | Artistic-2.0 |
| Version | 1.46.3 |
| URL | https://bioconductor.org/packages/GenomicFeatures |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
