KEGGprofile: An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway

KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.

AuthorShilin Zhao, Yan Guo, Yu Shyr
Date of publicationNone
MaintainerShilin Zhao <shilin.zhao@vanderbilt.edu>
LicenseGPL (>= 2)
Version1.16.0

View on Bioconductor

Files

KEGGprofile/DESCRIPTION
KEGGprofile/NAMESPACE
KEGGprofile/NEWS
KEGGprofile/R
KEGGprofile/R/KEGG_function.R KEGGprofile/R/convertId.R
KEGGprofile/README.md
KEGGprofile/build
KEGGprofile/build/vignette.rds
KEGGprofile/data
KEGGprofile/data/pho_sites_count.rda
KEGGprofile/data/pro_pho_expr.rda
KEGGprofile/inst
KEGGprofile/inst/doc
KEGGprofile/inst/doc/KEGGprofile.R
KEGGprofile/inst/doc/KEGGprofile.Rnw
KEGGprofile/inst/doc/KEGGprofile.pdf
KEGGprofile/inst/doc/Ref.bib
KEGGprofile/inst/extdata
KEGGprofile/inst/extdata/hsa04110.png
KEGGprofile/inst/extdata/hsa04110.xml
KEGGprofile/man
KEGGprofile/man/col_by_value.Rd KEGGprofile/man/convertId.Rd KEGGprofile/man/download_KEGGfile.Rd KEGGprofile/man/download_latest_pathway.Rd KEGGprofile/man/find_enriched_pathway.Rd KEGGprofile/man/newIdMatrix.Rd KEGGprofile/man/parse_XMLfile.Rd KEGGprofile/man/pho_sites_count.Rd KEGGprofile/man/plot_pathway.Rd KEGGprofile/man/plot_pathway_cor.Rd KEGGprofile/man/plot_profile.Rd KEGGprofile/man/pro_pho_expr.Rd
KEGGprofile/vignettes
KEGGprofile/vignettes/KEGGprofile.Rnw
KEGGprofile/vignettes/Ref.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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