KEGGprofile: An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway

KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGprofile")
AuthorShilin Zhao, Yan Guo, Yu Shyr
Bioconductor views KEGG Pathways
Date of publicationNone
MaintainerShilin Zhao <shilin.zhao@vanderbilt.edu>
LicenseGPL (>= 2)
Version1.18.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/KEGG_function.R R/convertId.R
README.md
build
build/vignette.rds
data
data/pho_sites_count.rda
data/pro_pho_expr.rda
inst
inst/doc
inst/doc/KEGGprofile.R
inst/doc/KEGGprofile.Rnw
inst/doc/KEGGprofile.pdf
inst/extdata
inst/extdata/hsa04110.png
inst/extdata/hsa04110.xml
man
man/col_by_value.Rd man/convertId.Rd man/download_KEGGfile.Rd man/download_latest_pathway.Rd man/find_enriched_pathway.Rd man/newIdMatrix.Rd man/parse_XMLfile.Rd man/pho_sites_count.Rd man/plot_pathway.Rd man/plot_pathway_cor.Rd man/plot_profile.Rd man/pro_pho_expr.Rd
vignettes
vignettes/KEGGprofile.Rnw
vignettes/Ref.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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