KEGGREST: Client-side REST access to KEGG
Version 1.16.0

A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Browse man pages Browse package API and functions Browse package files

AuthorDan Tenenbaum
Bioconductor views Annotation KEGG Pathways ThirdPartyClient
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.16.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGREST")

Man pages

keggConv: Convert KEGG identifiers to/from outside identifiers
keggFind: Finds entries with matching query keywords or other query...
keggGet: Retrieves given database entries
keggInfo: Displays the current statistics of a given database
keggLink: Find related entries by using database cross-references.
keggList: Returns a list of entry identifiers and associated definition...
listDatabases: Lists the KEGG databases which may be searched.
mark.pathway.by.objects: Client-side interface to obtain an url for a KEGG pathway...

Functions

bconv Man page
cleanUrl Source code
color.pathway.by.objects Man page Source code
conv Man page
flatFileParser Source code
get.tmp.url Source code
getGenomeUrl Source code
getRootUrl Source code
getUrl Source code
get_parser_ENTRY Source code
get_parser_NAME Source code
get_parser_REFERENCE Source code
get_parser_biostring Source code
get_parser_key_value Source code
get_parser_list Source code
get_parser_list_or_key_value Source code
info Man page
keggConv Man page Source code
keggFind Man page Source code
keggGet Man page Source code
keggInfo Man page Source code
keggLink Man page Source code
keggList Man page Source code
link Man page
listDatabases Man page Source code
listParser Source code
lstrip Source code
mark.pathway.by.objects Man page Source code
matrixParser Source code
organismListParser Source code
printf Source code
rstrip Source code
strip Source code
test Source code
textParser Source code

Files

DESCRIPTION
NAMESPACE
NEWS
QUESTIONS
R
R/KEGGREST.R
R/parsers.R
R/test_KEGGREST_package.R
R/utilities.R
build
build/vignette.rds
inst
inst/doc
inst/doc/KEGGREST-vignette.R
inst/doc/KEGGREST-vignette.Rmd
inst/doc/KEGGREST-vignette.html
inst/unitTests
inst/unitTests/test_KEGGREST.R
man
man/keggConv.Rd
man/keggFind.Rd
man/keggGet.Rd
man/keggInfo.Rd
man/keggLink.Rd
man/keggList.Rd
man/listDatabases.Rd
man/mark.pathway.by.objects.Rd
tests
tests/KEGGREST_unit_tests.R
vignettes
vignettes/KEGGREST-vignette.Rmd
KEGGREST documentation built on May 20, 2017, 9:50 p.m.