clusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters

This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

AuthorGuangchuang Yu [aut, cre], Li-Gen Wang [ctb], Giovanni Dall'Olio [ctb] (formula interface of compareCluster)
Date of publicationNone
MaintainerGuangchuang Yu <guangchuangyu@gmail.com>
LicenseArtistic-2.0
Version3.2.11
https://guangchuangyu.github.io/clusterProfiler

View on Bioconductor

Files in this package

clusterProfiler/DESCRIPTION
clusterProfiler/NAMESPACE
clusterProfiler/NEWS
clusterProfiler/R
clusterProfiler/R/00-AllClasses.R clusterProfiler/R/AllGenerics.R clusterProfiler/R/DOSE.R clusterProfiler/R/GFFparser.R clusterProfiler/R/GMT.R clusterProfiler/R/accessor.R clusterProfiler/R/bitr.R clusterProfiler/R/buildGOmap.R clusterProfiler/R/clusterProfiler-package.R clusterProfiler/R/compareCluster.R clusterProfiler/R/dotplot.R clusterProfiler/R/enrichDAVID.R clusterProfiler/R/enrichGO.R clusterProfiler/R/enrichKEGG.R clusterProfiler/R/enrichMKEGG.R clusterProfiler/R/enricher.R clusterProfiler/R/go-utilities.R clusterProfiler/R/gofilter.R clusterProfiler/R/groupGO.R clusterProfiler/R/gseAnalyzer.R clusterProfiler/R/kegg-utilities.R clusterProfiler/R/plotGOgraph.R clusterProfiler/R/simplify.R clusterProfiler/R/utilities.R clusterProfiler/R/zzz.R
clusterProfiler/build
clusterProfiler/build/vignette.rds
clusterProfiler/data
clusterProfiler/data/gcSample.rda
clusterProfiler/data/kegg_species.rda
clusterProfiler/inst
clusterProfiler/inst/CITATION
clusterProfiler/inst/doc
clusterProfiler/inst/doc/clusterProfiler.R
clusterProfiler/inst/doc/clusterProfiler.Rmd
clusterProfiler/inst/doc/clusterProfiler.html
clusterProfiler/inst/extdata
clusterProfiler/inst/extdata/c5.cc.v5.0.entrez.gmt
clusterProfiler/man
clusterProfiler/man/DataSet.Rd clusterProfiler/man/GSEA.Rd clusterProfiler/man/Gff2GeneTable.Rd clusterProfiler/man/bitr.Rd clusterProfiler/man/bitr_kegg.Rd clusterProfiler/man/browseKEGG.Rd clusterProfiler/man/buildGOmap.Rd clusterProfiler/man/clusterProfiler-package.Rd clusterProfiler/man/compareCluster.Rd clusterProfiler/man/compareClusterResult-class.Rd clusterProfiler/man/dotplot-methods.Rd clusterProfiler/man/download_KEGG.Rd clusterProfiler/man/dropGO.Rd clusterProfiler/man/enrichDAVID.Rd clusterProfiler/man/enrichGO.Rd clusterProfiler/man/enrichKEGG.Rd clusterProfiler/man/enrichMKEGG.Rd clusterProfiler/man/enricher.Rd clusterProfiler/man/fortify.Rd clusterProfiler/man/getGOLevel.Rd clusterProfiler/man/go2ont.Rd clusterProfiler/man/go2term.Rd clusterProfiler/man/gofilter.Rd clusterProfiler/man/groupGO.Rd clusterProfiler/man/groupGOResult-class.Rd clusterProfiler/man/gseGO.Rd clusterProfiler/man/gseKEGG.Rd clusterProfiler/man/gseMKEGG.Rd clusterProfiler/man/idType.Rd clusterProfiler/man/merge_result.Rd clusterProfiler/man/plot-methods.Rd clusterProfiler/man/plotGOgraph.Rd clusterProfiler/man/plotting.clusterProfile.Rd clusterProfiler/man/read.gmt.Rd clusterProfiler/man/search_kegg_organism.Rd clusterProfiler/man/simplify-methods.Rd clusterProfiler/man/viewKEGG.Rd
clusterProfiler/tests
clusterProfiler/tests/testthat
clusterProfiler/tests/testthat.R
clusterProfiler/tests/testthat/test-bitr.R
clusterProfiler/vignettes
clusterProfiler/vignettes/clusterProfiler.Rmd
clusterProfiler/vignettes/clusterProfiler.bib
clusterProfiler/vignettes/figures
clusterProfiler/vignettes/figures/browseKEGG.png
clusterProfiler/vignettes/figures/cnetplot.png
clusterProfiler/vignettes/figures/enrichMap.png
clusterProfiler/vignettes/figures/hsa04110_pathview.png
clusterProfiler/vignettes/nature.csl

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