Files in clusterProfiler

statistical analysis and visualization of functional profiles for genes and gene clusters

NEWS

NEWS.md

NAMESPACE

DESCRIPTION

R/dplyr-filter.R R/dplyr-select.R R/enrichDAVID.R R/AllGenerics.R R/gseAnalyzer.R R/compareCluster.R R/utilities.R R/wikiPathways.R R/enrichGO.R R/dplyr-group_by.R R/DOSE.R R/groupGO.R R/GMT.R R/kegg-utilities.R R/uniprot.R R/reexports.R R/simplify.R R/accessor.R R/go-utilities.R R/buildGOmap.R R/dplyr-arrange.R R/dplyr-rename.R R/plotGOgraph.R R/enrichMKEGG.R R/clusterProfiler-package.R R/dplyr-mutate.R R/enrichplot.R R/gofilter.R R/dplyr-summarise.R R/enricher.R R/zzz.R R/enrichKEGG.R R/00-AllClasses.R R/bitr.R R/dplyr-slice.R R/GFFparser.R

inst/CITATION

inst/doc/clusterProfiler.html

inst/doc/clusterProfiler.R inst/doc/clusterProfiler.Rmd

inst/extdata/c5.cc.v5.0.entrez.gmt

inst/extdata/wikipathways-20180810-gmt-Homo_sapiens.gmt

build/vignette.rds

tests/testthat.R tests/testthat/test-bitr.R vignettes/clusterProfiler.Rmd

data/kegg_species.rda

data/gcSample.rda

outdated/for_unsupported.md outdated/clusterProfiler_for_unsupported_organisms.pdf

outdated/for_unsupported.html

outdated/NC_007297.gff

outdated/rmd2pdf.R outdated/for_unsupported.rmd

outdated/clusterProfiler.Rnw

outdated/D39/EG2ALLGO.rda

outdated/D39/GO2EG.rda

outdated/D39/geneTable.rda

outdated/D39/proteinTable.rda

outdated/D39/EG2GO.rda

outdated/D39/GO2ALLEG.rda

outdated/M5005/EG2ALLGO.rda

outdated/M5005/GO2EG.rda

outdated/M5005/geneTable.rda

outdated/M5005/EG2GO.rda

outdated/M5005/GO2ALLEG.rda

man/idType.Rd man/viewKEGG.Rd man/dropGO.Rd man/enrichMKEGG.Rd man/merge_result.Rd man/gseWP.Rd man/reexports.Rd man/gofilter.Rd man/KEGG_path2extid.Rd man/enrichDAVID.Rd man/compareCluster.Rd man/download_KEGG.Rd man/gseKEGG.Rd man/go2ont.Rd man/plotGOgraph.Rd man/browseKEGG.Rd man/enrichKEGG.Rd man/uniprot_get.Rd man/go2term.Rd man/get_wp_organisms.Rd man/groupGO.Rd man/gseMKEGG.Rd man/GSEA.Rd man/enricher.Rd man/buildGOmap.Rd man/read-gmt.Rd man/enrichWP.Rd man/bitr.Rd man/bitr_kegg.Rd man/clusterProfiler-package.Rd man/DataSet.Rd man/groupGOResult-class.Rd man/Gff2GeneTable.Rd man/simplify-methods.Rd man/gseGO.Rd man/ko2name.Rd man/search_kegg_organism.Rd man/enrichGO.Rd

clusterProfiler documentation built on Feb. 11, 2021, 2:02 a.m.