KEGG_path2extid: KEGG_path2extid
In clusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters
Description
Usage
Arguments
Value
Author(s)
Description
query all genes in a KEGG pathway or module
Usage
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KEGG_path2extid(
keggID,
species = sub("\\d+$", "", keggID),
keggType = "Path",
keyType = "kegg"
)
Arguments
keggID
KEGG ID, path or module ID
species
species
keggType
one of 'Path' or 'Module'
keyType
KEGG gene type, one of "ncbi-proteinid", "ncbi-geneid", "uniprot", or "kegg"
Value
extid vector
Author(s)
guangchuang yu
clusterProfiler documentation built on Feb. 11, 2021, 2:02 a.m.
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Description Usage Arguments Value Author(s)
Description
query all genes in a KEGG pathway or module
Usage
1 2 3 4 5 6 | KEGG_path2extid(
keggID,
species = sub("\\d+$", "", keggID),
keggType = "Path",
keyType = "kegg"
)
|
Arguments
keggID |
KEGG ID, path or module ID |
species |
species |
keggType |
one of 'Path' or 'Module' |
keyType |
KEGG gene type, one of "ncbi-proteinid", "ncbi-geneid", "uniprot", or "kegg" |
Value
extid vector
Author(s)
guangchuang yu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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