Description Usage Arguments Value Author(s)
Gene Set Enrichment Analysis of KEGG
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
geneList |
order ranked geneList |
organism |
supported organism listed in 'http://www.genome.jp/kegg/catalog/org_list.html' |
keyType |
one of "kegg", 'ncbi-geneid', 'ncib-proteinid' and 'uniprot' |
exponent |
weight of each step |
minGSSize |
minimal size of each geneSet for analyzing |
maxGSSize |
maximal size of genes annotated for testing |
eps |
This parameter sets the boundary for calculating the p value. |
pvalueCutoff |
pvalue Cutoff |
pAdjustMethod |
pvalue adjustment method |
verbose |
print message or not |
use_internal_data |
logical, use KEGG.db or latest online KEGG data |
seed |
logical |
by |
one of 'fgsea' or 'DOSE' |
... |
other parameter |
gseaResult object
Yu Guangchuang
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.