Description Usage Arguments Value Author(s)
A universal enrichment analyzer
1 2 3 4 5 6 7 8 9 10 11 |
gene |
a vector of gene id |
pvalueCutoff |
adjusted pvalue cutoff on enrichment tests to report |
pAdjustMethod |
one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none" |
universe |
background genes. If missing, the all genes listed in the database (eg TERM2GENE table) will be used as background. |
minGSSize |
minimal size of genes annotated for testing |
maxGSSize |
maximal size of genes annotated for testing |
qvalueCutoff |
qvalue cutoff on enrichment tests to report as significant. Tests must pass i) |
TERM2GENE |
user input annotation of TERM TO GENE mapping, a data.frame of 2 column with term and gene |
TERM2NAME |
user input of TERM TO NAME mapping, a data.frame of 2 column with term and name |
A enrichResult
instance
Guangchuang Yu
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