Description Usage Arguments Value Author(s) References
simplify output from enrichGO and gseGO by removing redundancy of enriched GO terms
simplify output from compareCluster by removing redundancy of enriched GO terms
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | ## S4 method for signature 'enrichResult'
simplify(
x,
cutoff = 0.7,
by = "p.adjust",
select_fun = min,
measure = "Wang",
semData = NULL
)
## S4 method for signature 'gseaResult'
simplify(
x,
cutoff = 0.7,
by = "p.adjust",
select_fun = min,
measure = "Wang",
semData = NULL
)
## S4 method for signature 'compareClusterResult'
simplify(
x,
cutoff = 0.7,
by = "p.adjust",
select_fun = min,
measure = "Wang",
semData = NULL
)
|
x |
output of enrichGO |
cutoff |
similarity cutoff |
by |
feature to select representative term, selected by 'select_fun' function |
select_fun |
function to select feature passed by 'by' parameter |
measure |
method to measure similarity |
semData |
GOSemSimDATA object |
updated enrichResult object
updated compareClusterResult object
Guangchuang Yu
Gwang-Jin Kim and Guangchuang Yu
Guangchuang Yu
issue #28 https://github.com/GuangchuangYu/clusterProfiler/issues/28
issue #162 https://github.com/GuangchuangYu/clusterProfiler/issues/162
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