graphite: GRAPH Interaction from pathway Topological Environment

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

AuthorGabriele Sales <gabriele.sales@unipd.it>, Enrica Calura <enrica.calura@gmail.com>, Chiara Romualdi <chiara.romualdi@unipd.it>
Date of publicationNone
MaintainerGabriele Sales <gabriele.sales@unipd.it>
LicenseAGPL-3
Version1.20.1

View on Bioconductor

Files in this package

graphite/DESCRIPTION
graphite/NAMESPACE
graphite/R
graphite/R/build.R graphite/R/clipper.R graphite/R/conversion.R graphite/R/degraph.R graphite/R/fetch.R graphite/R/graph.R graphite/R/pathway.R graphite/R/plot.R graphite/R/spia.R graphite/R/tables.R graphite/R/topologygsa.R graphite/R/utils.R
graphite/build
graphite/build/vignette.rds
graphite/data
graphite/data/datalist
graphite/data/pathways.RData
graphite/inst
graphite/inst/NEWS
graphite/inst/doc
graphite/inst/doc/graphite.R
graphite/inst/doc/graphite.Rnw
graphite/inst/doc/graphite.pdf
graphite/man
graphite/man/DeprecatedPathwayList-class.Rd graphite/man/Pathway-class.Rd graphite/man/PathwayList-class.Rd graphite/man/Pathways-class.Rd graphite/man/as.list.DeprecatedPathwayList.Rd graphite/man/as.list.PathwayList.Rd graphite/man/biocarta.Rd graphite/man/buildPathway.Rd graphite/man/convertIdentifiers.Rd graphite/man/cytoscapePlot.Rd graphite/man/humancyc.Rd graphite/man/kegg.Rd graphite/man/nci.Rd graphite/man/panther.Rd graphite/man/pathwayDatabases.Rd graphite/man/pathwayGraph.Rd graphite/man/pathways.Rd graphite/man/prepareSPIA.Rd graphite/man/reactome.Rd graphite/man/runClipper.Rd graphite/man/runClipperMulti.Rd graphite/man/runDEGraph.Rd graphite/man/runDEGraphMulti.Rd graphite/man/runSPIA.Rd graphite/man/runTopologyGSA.Rd graphite/man/runTopologyGSAMulti.Rd
graphite/tests
graphite/tests/testthat
graphite/tests/testthat.R
graphite/tests/testthat/test_build.R
graphite/tests/testthat/test_conversion.R
graphite/vignettes
graphite/vignettes/Cytoscape.png
graphite/vignettes/graphite.Rnw

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