pathwayGraph: Graph representing the topology of a pathway

Description Usage Arguments Value See Also Examples

Description

Builds a graphNEL object representing the topology of a pathway.

Usage

1
pathwayGraph(pathway, edge.types=NULL)

Arguments

pathway

a Pathway object.

edge.types

keep only the edges maching the type names in this vector.

Value

A graphNEL object.

See Also

Pathway

graphNEL

Examples

1
2
  r <- pathways("hsapiens", "reactome")
  pathwayGraph(r$`mTOR signalling`, edge.types="Binding")


Search within the graphite package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.