pathwayGraph: Graph representing the topology of a pathway
In graphite: GRAPH Interaction from pathway Topological Environment
Description
Usage
Arguments
Value
See Also
Examples
Description
Builds a graphNEL object representing the topology of a pathway.
Usage
1
pathwayGraph(pathway, which = "proteins", edge.types = NULL)
Arguments
pathway
a Pathway object.
which
the pathway variant you want.
See Pathway documentation for a list of the supported variants.
edge.types
keep only the edges maching the type names in this vector.
Value
A graphNEL object.
See Also
Examples
1
2
r <- pathways("hsapiens", "reactome")
pathwayGraph(r$`mTORC1-mediated signalling`, edge.types="Binding")
graphite documentation built on Nov. 8, 2020, 8:12 p.m.
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Description Usage Arguments Value See Also Examples
Description
Builds a graphNEL object representing the topology of a pathway.
Usage
1 | pathwayGraph(pathway, which = "proteins", edge.types = NULL)
|
Arguments
pathway |
a |
which |
the pathway variant you want. See |
edge.types |
keep only the edges maching the type names in this vector. |
Value
A graphNEL object.
See Also
Examples
1 2 | r <- pathways("hsapiens", "reactome")
pathwayGraph(r$`mTORC1-mediated signalling`, edge.types="Binding")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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