prepareSPIA: Prepare pathway dataset needed by runSPIA.
In graphite: GRAPH Interaction from pathway Topological Environment
Description
Usage
Arguments
References
See Also
Description
Prepare pathway dataset needed by runSPIA. See runSPIA and
spia for more details.
Usage
1
prepareSPIA(db, pathwaySetName, print.names = FALSE)
Arguments
db
a PathwayList object or a list of
Pathways.
pathwaySetName
name of the output pathway set.
print.names
print pathway names as the conversion advances.
References
Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ,
Kusanovic JP, Romero R. A novel signaling pathway impact
analysis. Bioinformatics. 2009 Jan 1;25(1):75-82.
Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et. al, A Signaling Pathway Impact Analysis for
Microarray Experiments, 2008, Bioinformatics, 2009, 25(1):75-82.
Draghici, S., Khatri, P., Tarca, A.L., Amin, K., Done, A., Voichita, C., Georgescu, C., Romero, R.:
A systems biology approach for pathway level analysis. Genome Research, 17, 2007.
See Also
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Description Usage Arguments References See Also
Description
Prepare pathway dataset needed by runSPIA. See runSPIA and
spia for more details.
Usage
1 | prepareSPIA(db, pathwaySetName, print.names = FALSE)
|
Arguments
db |
a |
pathwaySetName |
name of the output pathway set. |
print.names |
print pathway names as the conversion advances. |
References
Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ, Kusanovic JP, Romero R. A novel signaling pathway impact analysis. Bioinformatics. 2009 Jan 1;25(1):75-82.
Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et. al, A Signaling Pathway Impact Analysis for Microarray Experiments, 2008, Bioinformatics, 2009, 25(1):75-82.
Draghici, S., Khatri, P., Tarca, A.L., Amin, K., Done, A., Voichita, C., Georgescu, C., Romero, R.: A systems biology approach for pathway level analysis. Genome Research, 17, 2007.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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