API for graphite
GRAPH Interaction from pathway Topological Environment

Global functions
$,PathwayList-method Man page
Pathway-class Man page
PathwayList-class Man page
Pathways-class Man page
[,PathwayList-method Man page
[[,PathwayList-method Man page
adaptiveLapply Source code
archiveDir Source code
archivePath Source code
as.list.PathwayList Man page Source code
assertEdges Source code
biocartaURL Source code
buildGraphNEL Source code
buildPathway Man page Source code
checkEdgeTypes Source code
checkIdentifier Source code
checkPathwayList Source code Source code
checkPkgVersion Source code
clipper Source code
clipperList Source code
convertColumn Source code
convertEdges Source code
convertIdentifiers Man page
convertIdentifiers,Pathway-method Man page
convertIdentifiers,PathwayList-method Man page
convertSide Source code
convertWithDbs Source code
cytoscapePlot Man page Source code
cytoscapePlot3 Source code
datasetName Source code
edgeList Source code
edgeMatrix Source code
edges,Pathway,character-method Man page
edges,Pathway,missing-method Man page
endpoints Source code
fetchRemote Source code
filterPathwaysByNodeNum Source code
fixEdges Source code
humancycURL Source code
initClipper Source code
initTopologyGSA Source code
insufficientCommonNodes Source code
keggURL Source code
length,PathwayList-method Man page
literalDataFrame Source code
loadDbs Source code
loadEnv Source code
loadLocal Source code
loadMetaboliteDb Source code
loadPathways Source code
loadProteinDb Source code
lookupKeys Source code
markMultipleEdges Source code
metabolites Source code
nameLapply Source code
names,PathwayList-method Man page
nciURL Source code
nodes,Pathway-method Man page
pantherURL Source code
parallelCluster Source code
pathwayDatabase Man page Source code
pathwayDatabases Man page Source code
pathwayGraph Man page Source code
pathwayId Man page Source code
pathwaySpecies Man page Source code
pathwayTimestamp Man page Source code
pathwayTitle Man page Source code
pathwayURL Man page Source code
pathways Man page Source code
pharmgkbURL Source code
plot,Pathway,ANY-method Man page
prepareEdges Source code
prepareSPIA Man page Source code
prepareSPIA,PathwayList-method Man page
prepareSPIA,list-method Man page
prettyDate Source code
purgeCache Source code
reactomeURL Source code
remoteUrl Source code
requirePkg Source code
runClipper Man page
runClipper,Pathway-method Man page
runClipper,PathwayList-method Man page
runClipper,list-method Man page
runClipperMulti Man page
runSPIA Man page Source code
runTopologyGSA Man page
runTopologyGSA,Pathway-method Man page
runTopologyGSA,PathwayList-method Man page
runTopologyGSA,list-method Man page
runTopologyGSAMulti Man page
selectConvColumns Source code
selectDb Source code
selectEdges Source code
selectMapping Source code
setEdgeAttributes Source code
setNodeAttributes Source code
smpdbURL Source code
splitByType Source code
switchTest Source code
symmetric Source code
topologyGSA Source code
topologyGSAList Source code
translateEdges Source code
viewNonNull Source code
wrapFun Source code
graphite documentation built on May 18, 2018, 6:01 p.m.