convertIdentifiers: Convert the node identifiers of a pathway.

Description Usage Arguments Value See Also Examples

Description

Converts the node identifiers of pathways.

If the option Ncpus is set to a value larger than 1 and the package parallel is installed, the conversion procedure will automatically use multiple cores.

Usage

1

Arguments

x

can be a list of pathways or a single pathway

to

a string describing the type of the identifier. Can assume the values "entrez", "symbol" or the name of one of the columns provided by an Annotation package (for example, "UNIPROT").

Value

A Pathway object.

See Also

Pathway

Examples

1
2
  r <- pathways("hsapiens", "reactome")
  convertIdentifiers(r$`mTOR signalling`, "symbol")

graphite documentation built on Nov. 17, 2017, 8:59 a.m.