Man pages for graphite
GRAPH Interaction from pathway Topological Environment

as.list.PathwayListConvertion of PathwayLists into lists.
buildPathwayBuild a Pathway object.
convertIdentifiersConvert the node identifiers of a pathway.
cytoscapePlotPlot a pathway graph in Cytoscape
Pathway-classClass '"Pathway"'
pathwayDatabasesList the available pathway databases.
pathwayGraphGraph representing the topology of a pathway
PathwayList-classClass '"PathwayList"'
pathwaysRetrieve a list of pathways.
Pathways-classClass '"Pathways"'
prepareSPIAPrepare pathway dataset needed by runSPIA.
runClipperRun a topological analysis on an expression dataset using...
runSPIARun SPIA analysis
runTopologyGSARun a topological analysis on an expression dataset using...
graphite documentation built on Nov. 1, 2018, 4:34 a.m.