cytoscapePlot: Plot a pathway graph in Cytoscape

Description Usage Arguments Details See Also Examples

View source: R/plot.R

Description

Renders the topology of a pathway as a Cytoscape graph.

Usage

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cytoscapePlot(pathway, ..., cy.ver = 3)

Arguments

pathway

a Pathway object.

...

optional arguments forwarded to pathwayGraph.

cy.ver

select a Cytoscape version. Only version 3 is supported in this release.

Details

Requires the RCy3 package.

See Also

Pathway

pathwayGraph

Examples

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## Not run: 
  r <- pathways()
  cytoscapePlot(convertIdentifiers(reactome$`Unwinding of DNA`, "symbol"))

## End(Not run)

graphite documentation built on Nov. 17, 2017, 8:59 a.m.