UniProt.ws: R Interface to UniProt Web Services

A collection of functions for retrieving, processing and repackaging the UniProt web services.

AuthorMarc Carlson
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic License 2.0
Version2.14.0

View on Bioconductor

Functions

3D Man page
AARHUS/GHENT-2DPAGE Man page
AGD Man page
ALLERGOME Man page
ARACHNOSERVER Man page
availableUniprotSpecies Man page
BIOCYC Man page
CGD Man page
CITATION Man page
class:UniProt.ws Man page
CLEANEX Man page
CLUSTERS Man page
cols Man page
columns Man page
columns,UniProt.ws-method Man page
COMMENTS Man page
CONOSERVER Man page
CYGD Man page
DATABASE(PDB) Man page
DATABASE(PFAM) Man page
DICTYBASE Man page
DIP Man page
DISPROT Man page
DMDM Man page
DNASU Man page
DOMAIN Man page
DOMAINS Man page
DRUGBANK Man page
EC Man page
ECHOBASE Man page
ECO2DBASE Man page
ECOGENE Man page
EGGNOG Man page
EMBL/GENBANK/DDBJ Man page
EMBL/GENBANK/DDBJ_CDS Man page
ENSEMBL Man page
ENSEMBL_GENOMES Man page
ENSEMBL_GENOMES PROTEIN Man page
ENSEMBL_GENOMES TRANSCRIPT Man page
ENSEMBL_PROTEIN Man page
ENSEMBL_TRANSCRIPT Man page
ENTREZ_GENE Man page
ENTRY NAME Man page
EUHCVDB Man page
EUPATHDB Man page
EXISTENCE Man page
FAMILIES Man page
FEATURES Man page
FLYBASE Man page
GENECARDS Man page
GENEFARM Man page
GENEID Man page
GENES Man page
GENETREE Man page
GENOLIST Man page
GENOMEREVIEWS Man page
GENOMERNAI Man page
GERMONLINE Man page
GI_NUMBER* Man page
GO Man page
GO-ID Man page
HGNC Man page
H-INVDB Man page
HOGENOM Man page
HOVERGEN Man page
HPA Man page
HSSP Man page
ID Man page
INTERACTOR Man page
INTERPRO Man page
IPI Man page
KEGG Man page
keys Man page
keys,UniProt.ws-method Man page
keytypes Man page
keytypes,UniProt.ws-method Man page
KEYWORD-ID Man page
KEYWORDS Man page
KO Man page
LAST-MODIFIED Man page
LEGIOLIST Man page
LENGTH Man page
LEPROMA Man page
lookupUniprotSpeciesFromTaxId Man page
MAIZEGDB Man page
MEROPS Man page
MGI Man page
MIM Man page
MINT Man page
NEXTBIO Man page
NEXTPROT Man page
OMA Man page
ORGANISM Man page
ORGANISM-ID Man page
ORPHANET Man page
ORTHODB Man page
PATHWAY Man page
PATRIC Man page
PDB Man page
PEROXIBASE Man page
PHARMGKB Man page
PHOSSITE Man page
PIR Man page
POMBASE Man page
PPTASEDB Man page
PROTCLUSTDB Man page
PROTEIN NAMES Man page
PSEUDOCAP Man page
REACTOME Man page
REBASE Man page
REFSEQ_NUCLEOTIDE Man page
REFSEQ_PROTEIN Man page
REVIEWED Man page
RGD Man page
SCORE Man page
select Man page
select,UniProt.ws-method Man page
SEQUENCE Man page
SGD Man page
show,UniProt.ws-method Man page
species Man page
species,UniProt.ws-method Man page
SUBCELLULAR LOCATIONS Man page
TAIR Man page
taxId Man page
taxId<- Man page
taxId<-,UniProt.ws-method Man page
taxId,UniProt.ws-method Man page
TAXONOMY-LINEAGE Man page
TCDB Man page
TIGR Man page
TOOLS Man page
TUBERCULIST Man page
UCSC Man page
UNIGENE Man page
UNIPARC Man page
UNIPATHWAY Man page
UNIPROTKB Man page
UniProt.ws Man page
UniProt.ws-class Man page
UNIREF100 Man page
UNIREF50 Man page
UNIREF90 Man page
VECTORBASE Man page
VERSION Man page
VIRUS_HOSTS Man page
WORLD-2DPAGE Man page
WORMBASE Man page
WORMBASE_PROTEIN Man page
WORMBASE_TRANSCRIPT Man page
XENBASE Man page
ZFIN Man page

Files

UniProt.ws/DESCRIPTION
UniProt.ws/NAMESPACE
UniProt.ws/NEWS
UniProt.ws/R
UniProt.ws/R/AllClasses.R UniProt.ws/R/AllGenerics.R UniProt.ws/R/getFunctions.R UniProt.ws/R/methods-select.R UniProt.ws/R/test_UniProt.ws_package.R
UniProt.ws/build
UniProt.ws/build/vignette.rds
UniProt.ws/inst
UniProt.ws/inst/doc
UniProt.ws/inst/doc/UniProt.ws.R
UniProt.ws/inst/doc/UniProt.ws.Rnw
UniProt.ws/inst/doc/UniProt.ws.pdf
UniProt.ws/inst/extdata
UniProt.ws/inst/extdata/availSpecies.txt
UniProt.ws/inst/extdata/extraCols.txt
UniProt.ws/inst/extdata/keytypes.txt
UniProt.ws/inst/script
UniProt.ws/inst/script/processAvailableSpeciesFiles.txt
UniProt.ws/inst/unitTests
UniProt.ws/inst/unitTests/test_select.R
UniProt.ws/inst/unitTests/test_serviceAccessors.R
UniProt.ws/man
UniProt.ws/man/UniProtWS-class.Rd UniProt.ws/man/colsAndKeytypes.Rd
UniProt.ws/tests
UniProt.ws/tests/UniProt.ws_unit_tests.R
UniProt.ws/vignettes
UniProt.ws/vignettes/UniProt.ws.Rnw

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