UniProt.ws: R Interface to UniProt Web Services
Version 2.16.0

A collection of functions for retrieving, processing and repackaging the UniProt web services.

Browse man pages Browse package API and functions Browse package files

AuthorMarc Carlson
Bioconductor views Annotation BioCarta GO Infrastructure KEGG
Date of publicationNone
MaintainerMarc Carlson <maintainer@bioconductor.org>
LicenseArtistic License 2.0
Version2.16.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("UniProt.ws")

Man pages

colsAndKeytypes: Descriptions of available values for 'columns' and...
UniProtWS-class: UniProt.ws objects and their related methods and functions
utilities: Utility functions

Functions

3D Man page
AARHUS/GHENT-2DPAGE Man page
AGD Man page
ALLERGOME Man page
ARACHNOSERVER Man page
BIOCYC Man page
CGD Man page
CITATION Man page
CLEANEX Man page
CLUSTERS Man page
COMMENTS Man page
CONOSERVER Man page
CYGD Man page
DATABASE(PDB) Man page
DATABASE(PFAM) Man page
DICTYBASE Man page
DIP Man page
DISPROT Man page
DMDM Man page
DNASU Man page
DOMAIN Man page
DOMAINS Man page
DRUGBANK Man page
EC Man page
ECHOBASE Man page
ECO2DBASE Man page
ECOGENE Man page
EGGNOG Man page
EMBL/GENBANK/DDBJ Man page
EMBL/GENBANK/DDBJ_CDS Man page
ENSEMBL Man page
ENSEMBL_GENOMES Man page
ENSEMBL_GENOMES PROTEIN Man page
ENSEMBL_GENOMES TRANSCRIPT Man page
ENSEMBL_PROTEIN Man page
ENSEMBL_TRANSCRIPT Man page
ENTREZ_GENE Man page
ENTRY NAME Man page
EUHCVDB Man page
EUPATHDB Man page
EXISTENCE Man page
FAMILIES Man page
FEATURES Man page
FLYBASE Man page
GENECARDS Man page
GENEFARM Man page
GENEID Man page
GENES Man page
GENETREE Man page
GENOLIST Man page
GENOMEREVIEWS Man page
GENOMERNAI Man page
GERMONLINE Man page
GI_NUMBER* Man page
GO Man page
GO-ID Man page
H-INVDB Man page
HGNC Man page
HOGENOM Man page
HOVERGEN Man page
HPA Man page
HSSP Man page
ID Man page
INTERACTOR Man page
INTERPRO Man page
IPI Man page
KEGG Man page
KEYWORD-ID Man page
KEYWORDS Man page
KO Man page
LAST-MODIFIED Man page
LEGIOLIST Man page
LENGTH Man page
LEPROMA Man page
MAIZEGDB Man page
MEROPS Man page
MGI Man page
MIM Man page
MINT Man page
NEXTBIO Man page
NEXTPROT Man page
OMA Man page
ORGANISM Man page
ORGANISM-ID Man page
ORPHANET Man page
ORTHODB Man page
PATHWAY Man page
PATRIC Man page
PDB Man page
PEROXIBASE Man page
PHARMGKB Man page
PHOSSITE Man page
PIR Man page
POMBASE Man page
PPTASEDB Man page
PROTCLUSTDB Man page
PROTEIN NAMES Man page
PSEUDOCAP Man page
REACTOME Man page
REBASE Man page
REFSEQ_NUCLEOTIDE Man page
REFSEQ_PROTEIN Man page
REVIEWED Man page
RGD Man page
SCORE Man page
SEQUENCE Man page
SGD Man page
SUBCELLULAR LOCATIONS Man page
TAIR Man page
TAXONOMY-LINEAGE Man page
TCDB Man page
TIGR Man page
TOOLS Man page
TUBERCULIST Man page
UCSC Man page
UNIGENE Man page
UNIPARC Man page
UNIPATHWAY Man page
UNIPROTKB Man page
UNIREF100 Man page
UNIREF50 Man page
UNIREF90 Man page
UniProt.ws Man page Source code
UniProt.ws-class Man page
VECTORBASE Man page
VERSION Man page
VIRUS_HOSTS Man page
WORLD-2DPAGE Man page
WORMBASE Man page
WORMBASE_PROTEIN Man page
WORMBASE_TRANSCRIPT Man page
XENBASE Man page
ZFIN Man page
availableUniprotSpecies Man page Source code
backFillCols Source code
class:UniProt.ws Man page
cleanup Source code
cols Man page Source code
columns Man page
columns,UniProt.ws-method Man page
dataNibbler Source code
digestspecfile Source code
getOneToMany Source code
getSomeUniprotGoodies Source code
getSpecfile Source code
getUPMappdata Source code
getUniprotGoodies Source code
getUniprots Source code
keys Man page Source code
keys,UniProt.ws-method Man page
keytypes Man page Source code
keytypes,UniProt.ws-method Man page
lookupUniprotSpeciesFromTaxId Man page Source code
makeChunkVector Source code
makeDbPkgName Source code
makePkgName Source code
mapUni Source code
mapUniprot Source code
mergeList Source code
select Man page Source code
select,UniProt.ws-method Man page
show,UniProt.ws-method Man page
species Man page
species,UniProt.ws-method Man page
taxId Man page
taxId,UniProt.ws-method Man page
taxId<- Man page
taxId<-,UniProt.ws-method Man page
taxname2domain Man page Source code
taxname2species Man page Source code
taxname2taxid Man page Source code
test Source code
tryGetResult Source code
tryReadResult Source code
tryToGetAllChunks Source code
updatespecfile Man page Source code
utilities Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/AllClasses.R
R/AllGenerics.R
R/getFunctions.R
R/methods-select.R
R/test_UniProt.ws_package.R
R/utilities.R
build
build/vignette.rds
inst
inst/doc
inst/doc/UniProt.ws.R
inst/doc/UniProt.ws.Rnw
inst/doc/UniProt.ws.pdf
inst/extdata
inst/extdata/availSpecies.txt
inst/extdata/extraCols.txt
inst/extdata/keytypes.txt
inst/extdata/speclist.RData
inst/script
inst/script/processAvailableSpeciesFiles.txt
inst/unitTests
inst/unitTests/test_select.R
inst/unitTests/test_serviceAccessors.R
inst/unitTests/test_utilities.R
man
man/UniProtWS-class.Rd
man/colsAndKeytypes.Rd
man/utilities.Rd
tests
tests/UniProt.ws_unit_tests.R
vignettes
vignettes/UniProt.ws.Rnw
UniProt.ws documentation built on May 20, 2017, 10:30 p.m.