MLP: MLP

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Mean Log P Analysis

Author
Nandini Raghavan, Tobias Verbeke, An De Bondt with contributions by Javier Cabrera, Dhammika Amaratunga, Tine Casneuf and Willem Ligtenberg
Date of publication
None
Maintainer
Tobias Verbeke <tobias.verbeke@openanalytics.eu>
License
GPL-3
Version
1.22.0

View on Bioconductor

Man pages

addGeneSetDescription
Utility function which adds the biological description of the...
getGeneSets
Prepare Pathway Data for the MLP Function
MLP
This function calculates p-values for each gene set based on...
mlpBarplot
Draw a Barplot for MLP Results
plotGeneSetSignificance
Plot the Significance for the Genes of a Given Gene Set
plotGOgraph
Graphical Representation of GO Based MLP Results
plot.MLP
Plot the Results of an MLP Run

Files in this package

MLP/DESCRIPTION
MLP/NAMESPACE
MLP/R
MLP/R/MLP.R
MLP/R/addGeneSetDescription.R
MLP/R/getGeneSets.R
MLP/R/mlpBarplot.R
MLP/R/plot.MLP.R
MLP/R/plotGOgraph.R
MLP/R/plotGeneSetSignificance.R
MLP/R/plotQuantileCurves.R
MLP/R/utils.R
MLP/build
MLP/build/vignette.rds
MLP/inst
MLP/inst/NEWS
MLP/inst/doc
MLP/inst/doc/UsingMLP.R
MLP/inst/doc/UsingMLP.Rnw
MLP/inst/doc/UsingMLP.pdf
MLP/inst/exampleFiles
MLP/inst/exampleFiles/exampleGeneSet.rda
MLP/inst/exampleFiles/exampleMLPResult.rda
MLP/inst/exampleFiles/examplePValues.rda
MLP/inst/exampleFiles/expressionSetGcrma.rda
MLP/inst/scripts
MLP/inst/scripts/generateExampleFiles.R
MLP/man
MLP/man/MLP.Rd
MLP/man/addGeneSetDescription.Rd
MLP/man/getGeneSets.Rd
MLP/man/mlpBarplot.Rd
MLP/man/plot.MLP.Rd
MLP/man/plotGOgraph.Rd
MLP/man/plotGeneSetSignificance.Rd
MLP/tests
MLP/tests/test.MLP.R
MLP/vignettes
MLP/vignettes/UsingMLP.Rnw