ExpressionView: Visualize biclusters identified in gene expression data

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ExpressionView")
AuthorAndreas Luscher <andreas.luescher@a3.epfl.ch>
Bioconductor views Classification GO GeneExpression KEGG Microarray Visualization
Date of publicationNone
MaintainerGabor Csardi <csardi.gabor@gmail.com>
LicenseGPL (>= 2)
Version1.28.0

View on Bioconductor

Functions

ExportEV Man page
ExportEV,Biclust-method Man page
ExportEV,ISAModules-method Man page
ExportEV,list-method Man page
ExportEV-methods Man page
ExpressionView-package Man page
LaunchEV Man page
OrderEV Man page
OrderEV,Biclust-method Man page
OrderEV,ISAModules-method Man page
OrderEV,list-method Man page
OrderEV-methods Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllGenerics.R R/export.R R/launch.R R/order.R R/zzz.R
build
build/vignette.rds
inst
inst/AC_OETags.js
inst/ExpressionView.html
inst/ExpressionView.swf
inst/doc
inst/doc/ExpressionView.format.Rnw
inst/doc/ExpressionView.format.pdf
inst/doc/ExpressionView.ordering.R
inst/doc/ExpressionView.ordering.Rnw
inst/doc/ExpressionView.ordering.pdf
inst/doc/ExpressionView.tutorial.R
inst/doc/ExpressionView.tutorial.Rnw
inst/doc/ExpressionView.tutorial.pdf
inst/playerProductInstall.swf
inst/srcview
inst/srcview/AC_OETags.js
inst/srcview/ExpressionView.html
inst/srcview/all-classes.html
inst/srcview/all-index-A.html
inst/srcview/all-index-B.html
inst/srcview/all-index-C.html
inst/srcview/all-index-D.html
inst/srcview/all-index-E.html
inst/srcview/all-index-F.html
inst/srcview/all-index-G.html
inst/srcview/all-index-H.html
inst/srcview/all-index-I.html
inst/srcview/all-index-J.html
inst/srcview/all-index-K.html
inst/srcview/all-index-L.html
inst/srcview/all-index-M.html
inst/srcview/all-index-N.html
inst/srcview/all-index-O.html
inst/srcview/all-index-P.html
inst/srcview/all-index-Q.html
inst/srcview/all-index-R.html
inst/srcview/all-index-S.html
inst/srcview/all-index-T.html
inst/srcview/all-index-U.html
inst/srcview/all-index-V.html
inst/srcview/all-index-W.html
inst/srcview/all-index-X.html
inst/srcview/all-index-Y.html
inst/srcview/all-index-Z.html
inst/srcview/asdoc.js
inst/srcview/ch
inst/srcview/ch/unil
inst/srcview/ch/unil/cbg
inst/srcview/ch/unil/cbg/ExpressionView
inst/srcview/ch/unil/cbg/ExpressionView/events
inst/srcview/ch/unil/cbg/ExpressionView/events/BroadcastPositionEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/ClosableTabNavigatorEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/GEDCompleteEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/HighlightingEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/MenuEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/PopUpEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/ResizeBrowserEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/SearchableDataGridSelectionEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/UpdateGEDataEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/UpdateStatusBarEvent.html
inst/srcview/ch/unil/cbg/ExpressionView/events/class-list.html
inst/srcview/ch/unil/cbg/ExpressionView/events/package-detail.html
inst/srcview/ch/unil/cbg/ExpressionView/model
inst/srcview/ch/unil/cbg/ExpressionView/model/GeneExpressionData.html
inst/srcview/ch/unil/cbg/ExpressionView/model/GeneExpressionModule.html
inst/srcview/ch/unil/cbg/ExpressionView/model/class-list.html
inst/srcview/ch/unil/cbg/ExpressionView/model/package-detail.html
inst/srcview/ch/unil/cbg/ExpressionView/styles
inst/srcview/ch/unil/cbg/ExpressionView/styles/CustomButtonBarButtonSkin.html
inst/srcview/ch/unil/cbg/ExpressionView/styles/CustomButtonSkin.html
inst/srcview/ch/unil/cbg/ExpressionView/styles/class-list.html
inst/srcview/ch/unil/cbg/ExpressionView/styles/package-detail.html
inst/srcview/ch/unil/cbg/ExpressionView/utilities
inst/srcview/ch/unil/cbg/ExpressionView/utilities/LargeBitmapData.html
inst/srcview/ch/unil/cbg/ExpressionView/utilities/class-list.html
inst/srcview/ch/unil/cbg/ExpressionView/utilities/package-detail.html
inst/srcview/ch/unil/cbg/ExpressionView/view
inst/srcview/ch/unil/cbg/ExpressionView/view/BackgroundCanvas.html
inst/srcview/ch/unil/cbg/ExpressionView/view/MainCanvas.html
inst/srcview/ch/unil/cbg/ExpressionView/view/MenuBar.html
inst/srcview/ch/unil/cbg/ExpressionView/view/StatusBar.html
inst/srcview/ch/unil/cbg/ExpressionView/view/class-list.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components
inst/srcview/ch/unil/cbg/ExpressionView/view/components/ClosableTab.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/ClosableTabBar.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/ClosableTabNavigator.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/HeaderRenderer.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/LinkRenderer.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/SearchableDataGrid.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/SelectModules.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/ZoomPanCanvas.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/class-list.html
inst/srcview/ch/unil/cbg/ExpressionView/view/components/package-detail.html
inst/srcview/ch/unil/cbg/ExpressionView/view/package-detail.html
inst/srcview/class-list.html
inst/srcview/class-summary.html
inst/srcview/cookies.js
inst/srcview/help.js
inst/srcview/images
inst/srcview/images/AirIcon12x12.gif
inst/srcview/images/P_AlternativeMetadataIndicator_30x28_N.png
inst/srcview/images/collapsed.gif
inst/srcview/images/detailHeaderRule.jpg
inst/srcview/images/detailSectionHeader.jpg
inst/srcview/images/expanded.gif
inst/srcview/images/inherit-arrow.gif
inst/srcview/images/inheritedSummary.gif
inst/srcview/images/logo.jpg
inst/srcview/images/titleTableBottom.jpg
inst/srcview/images/titleTableMiddle.jpg
inst/srcview/images/titleTableTop.jpg
inst/srcview/index-list.html
inst/srcview/index.html
inst/srcview/org
inst/srcview/org/alivepdf
inst/srcview/org/alivepdf/cells
inst/srcview/org/alivepdf/cells/CellVO.html
inst/srcview/org/alivepdf/cells/class-list.html
inst/srcview/org/alivepdf/cells/package-detail.html
inst/srcview/org/alivepdf/colors
inst/srcview/org/alivepdf/colors/CMYKColor.html
inst/srcview/org/alivepdf/colors/Color.html
inst/srcview/org/alivepdf/colors/GrayColor.html
inst/srcview/org/alivepdf/colors/RGBColor.html
inst/srcview/org/alivepdf/colors/class-list.html
inst/srcview/org/alivepdf/colors/package-detail.html
inst/srcview/org/alivepdf/data
inst/srcview/org/alivepdf/data/Grid.html
inst/srcview/org/alivepdf/data/GridColumn.html
inst/srcview/org/alivepdf/data/class-list.html
inst/srcview/org/alivepdf/data/package-detail.html
inst/srcview/org/alivepdf/display
inst/srcview/org/alivepdf/display/Display.html
inst/srcview/org/alivepdf/display/PageMode.html
inst/srcview/org/alivepdf/display/class-list.html
inst/srcview/org/alivepdf/display/package-detail.html
inst/srcview/org/alivepdf/drawing
inst/srcview/org/alivepdf/drawing/Caps.html
inst/srcview/org/alivepdf/drawing/DashedLine.html
inst/srcview/org/alivepdf/drawing/WindingRule.html
inst/srcview/org/alivepdf/drawing/class-list.html
inst/srcview/org/alivepdf/drawing/package-detail.html
inst/srcview/org/alivepdf/encoding
inst/srcview/org/alivepdf/encoding/Base64.html
inst/srcview/org/alivepdf/encoding/BitString.html
inst/srcview/org/alivepdf/encoding/IntBlock.html
inst/srcview/org/alivepdf/encoding/IntList.html
inst/srcview/org/alivepdf/encoding/JPEGEncoder.html
inst/srcview/org/alivepdf/encoding/PNGEncoder.html
inst/srcview/org/alivepdf/encoding/class-list.html
inst/srcview/org/alivepdf/encoding/package-detail.html
inst/srcview/org/alivepdf/events
inst/srcview/org/alivepdf/events/PageEvent.html
inst/srcview/org/alivepdf/events/PagingEvent.html
inst/srcview/org/alivepdf/events/ProcessingEvent.html
inst/srcview/org/alivepdf/events/class-list.html
inst/srcview/org/alivepdf/events/package-detail.html
inst/srcview/org/alivepdf/fonts
inst/srcview/org/alivepdf/fonts/CoreFonts.html
inst/srcview/org/alivepdf/fonts/FontFamily.html
inst/srcview/org/alivepdf/fonts/FontType.html
inst/srcview/org/alivepdf/fonts/Style.html
inst/srcview/org/alivepdf/fonts/class-list.html
inst/srcview/org/alivepdf/fonts/package-detail.html
inst/srcview/org/alivepdf/html
inst/srcview/org/alivepdf/html/HTMLTag.html
inst/srcview/org/alivepdf/html/class-list.html
inst/srcview/org/alivepdf/html/package-detail.html
inst/srcview/org/alivepdf/images
inst/srcview/org/alivepdf/images/GIFImage.html
inst/srcview/org/alivepdf/images/IImage.html
inst/srcview/org/alivepdf/images/ImageFormat.html
inst/srcview/org/alivepdf/images/ImageHeader.html
inst/srcview/org/alivepdf/images/JPEGImage.html
inst/srcview/org/alivepdf/images/PDFImage.html
inst/srcview/org/alivepdf/images/PNGImage.html
inst/srcview/org/alivepdf/images/ResizeMode.html
inst/srcview/org/alivepdf/images/class-list.html
inst/srcview/org/alivepdf/images/package-detail.html
inst/srcview/org/alivepdf/layout
inst/srcview/org/alivepdf/layout/Align.html
inst/srcview/org/alivepdf/layout/Layout.html
inst/srcview/org/alivepdf/layout/Orientation.html
inst/srcview/org/alivepdf/layout/Size.html
inst/srcview/org/alivepdf/layout/Unit.html
inst/srcview/org/alivepdf/layout/class-list.html
inst/srcview/org/alivepdf/layout/package-detail.html
inst/srcview/org/alivepdf/metrics
inst/srcview/org/alivepdf/metrics/FontMetrics.html
inst/srcview/org/alivepdf/metrics/class-list.html
inst/srcview/org/alivepdf/metrics/package-detail.html
inst/srcview/org/alivepdf/pages
inst/srcview/org/alivepdf/pages/Page.html
inst/srcview/org/alivepdf/pages/class-list.html
inst/srcview/org/alivepdf/pages/package-detail.html
inst/srcview/org/alivepdf/pdf
inst/srcview/org/alivepdf/pdf/PDF.html
inst/srcview/org/alivepdf/pdf/class-list.html
inst/srcview/org/alivepdf/pdf/package-detail.html
inst/srcview/org/alivepdf/saving
inst/srcview/org/alivepdf/saving/Method.html
inst/srcview/org/alivepdf/saving/class-list.html
inst/srcview/org/alivepdf/saving/package-detail.html
inst/srcview/org/alivepdf/tools
inst/srcview/org/alivepdf/tools/class-list.html
inst/srcview/org/alivepdf/tools/package-detail.html
inst/srcview/org/alivepdf/tools/package.html
inst/srcview/override.css
inst/srcview/package-detail.html
inst/srcview/package-frame.html
inst/srcview/package-list.html
inst/srcview/package-summary.html
inst/srcview/print.css
inst/srcview/style.css
inst/srcview/title-bar.html
man
man/ExportEV.Rd man/ExpressionView-package.Rd man/LaunchEV.Rd man/OrderEV.Rd
src
src/order.cpp
src/orderclusters.cpp
src/orderclusters.h
vignettes
vignettes/ExpressionView.bib
vignettes/ExpressionView.format.Rnw
vignettes/ExpressionView.ordering.Rnw
vignettes/ExpressionView.tutorial.Rnw
vignettes/expressionview.xsd
vignettes/figures
vignettes/figures/nclusters.pdf
vignettes/figures/nslots.pdf
vignettes/figures/ordering.pdf
vignettes/figures/screenshot.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.