ExpressionView: Visualize biclusters identified in gene expression data

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ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author
Andreas Luscher <andreas.luescher@a3.epfl.ch>
Date of publication
None
Maintainer
Gabor Csardi <csardi.gabor@gmail.com>
License
GPL (>= 2)
Version
1.26.0

View on Bioconductor

Man pages

ExportEV
Export an ExpressionView file
ExpressionView-package
The ExpressionView package
LaunchEV
Launch the ExpressionView Flash applet
OrderEV
Find the optimal arrangement of biclusters for visualization...

Files in this package

ExpressionView/DESCRIPTION
ExpressionView/NAMESPACE
ExpressionView/R
ExpressionView/R/AllGenerics.R
ExpressionView/R/export.R
ExpressionView/R/launch.R
ExpressionView/R/order.R
ExpressionView/R/zzz.R
ExpressionView/build
ExpressionView/build/vignette.rds
ExpressionView/inst
ExpressionView/inst/AC_OETags.js
ExpressionView/inst/ExpressionView.html
ExpressionView/inst/ExpressionView.swf
ExpressionView/inst/doc
ExpressionView/inst/doc/ExpressionView.format.Rnw
ExpressionView/inst/doc/ExpressionView.format.pdf
ExpressionView/inst/doc/ExpressionView.ordering.R
ExpressionView/inst/doc/ExpressionView.ordering.Rnw
ExpressionView/inst/doc/ExpressionView.ordering.pdf
ExpressionView/inst/doc/ExpressionView.tutorial.R
ExpressionView/inst/doc/ExpressionView.tutorial.Rnw
ExpressionView/inst/doc/ExpressionView.tutorial.pdf
ExpressionView/inst/playerProductInstall.swf
ExpressionView/inst/srcview
ExpressionView/inst/srcview/AC_OETags.js
ExpressionView/inst/srcview/ExpressionView.html
ExpressionView/inst/srcview/all-classes.html
ExpressionView/inst/srcview/all-index-A.html
ExpressionView/inst/srcview/all-index-B.html
ExpressionView/inst/srcview/all-index-C.html
ExpressionView/inst/srcview/all-index-D.html
ExpressionView/inst/srcview/all-index-E.html
ExpressionView/inst/srcview/all-index-F.html
ExpressionView/inst/srcview/all-index-G.html
ExpressionView/inst/srcview/all-index-H.html
ExpressionView/inst/srcview/all-index-I.html
ExpressionView/inst/srcview/all-index-J.html
ExpressionView/inst/srcview/all-index-K.html
ExpressionView/inst/srcview/all-index-L.html
ExpressionView/inst/srcview/all-index-M.html
ExpressionView/inst/srcview/all-index-N.html
ExpressionView/inst/srcview/all-index-O.html
ExpressionView/inst/srcview/all-index-P.html
ExpressionView/inst/srcview/all-index-Q.html
ExpressionView/inst/srcview/all-index-R.html
ExpressionView/inst/srcview/all-index-S.html
ExpressionView/inst/srcview/all-index-T.html
ExpressionView/inst/srcview/all-index-U.html
ExpressionView/inst/srcview/all-index-V.html
ExpressionView/inst/srcview/all-index-W.html
ExpressionView/inst/srcview/all-index-X.html
ExpressionView/inst/srcview/all-index-Y.html
ExpressionView/inst/srcview/all-index-Z.html
ExpressionView/inst/srcview/asdoc.js
ExpressionView/inst/srcview/ch
ExpressionView/inst/srcview/ch/unil
ExpressionView/inst/srcview/ch/unil/cbg
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/BroadcastPositionEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/ClosableTabNavigatorEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/GEDCompleteEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/HighlightingEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/MenuEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/PopUpEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/ResizeBrowserEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/SearchableDataGridSelectionEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/UpdateGEDataEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/UpdateStatusBarEvent.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/class-list.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/events/package-detail.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/model
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/model/GeneExpressionData.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/model/GeneExpressionModule.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/model/class-list.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/model/package-detail.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/styles
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/styles/CustomButtonBarButtonSkin.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/styles/CustomButtonSkin.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/styles/class-list.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/styles/package-detail.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/utilities
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/utilities/LargeBitmapData.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/utilities/class-list.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/utilities/package-detail.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/BackgroundCanvas.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/MainCanvas.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/MenuBar.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/StatusBar.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/class-list.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/ClosableTab.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/ClosableTabBar.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/ClosableTabNavigator.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/HeaderRenderer.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/LinkRenderer.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/SearchableDataGrid.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/SelectModules.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/ZoomPanCanvas.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/class-list.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/components/package-detail.html
ExpressionView/inst/srcview/ch/unil/cbg/ExpressionView/view/package-detail.html
ExpressionView/inst/srcview/class-list.html
ExpressionView/inst/srcview/class-summary.html
ExpressionView/inst/srcview/cookies.js
ExpressionView/inst/srcview/help.js
ExpressionView/inst/srcview/images
ExpressionView/inst/srcview/images/AirIcon12x12.gif
ExpressionView/inst/srcview/images/P_AlternativeMetadataIndicator_30x28_N.png
ExpressionView/inst/srcview/images/collapsed.gif
ExpressionView/inst/srcview/images/detailHeaderRule.jpg
ExpressionView/inst/srcview/images/detailSectionHeader.jpg
ExpressionView/inst/srcview/images/expanded.gif
ExpressionView/inst/srcview/images/inherit-arrow.gif
ExpressionView/inst/srcview/images/inheritedSummary.gif
ExpressionView/inst/srcview/images/logo.jpg
ExpressionView/inst/srcview/images/titleTableBottom.jpg
ExpressionView/inst/srcview/images/titleTableMiddle.jpg
ExpressionView/inst/srcview/images/titleTableTop.jpg
ExpressionView/inst/srcview/index-list.html
ExpressionView/inst/srcview/index.html
ExpressionView/inst/srcview/org
ExpressionView/inst/srcview/org/alivepdf
ExpressionView/inst/srcview/org/alivepdf/cells
ExpressionView/inst/srcview/org/alivepdf/cells/CellVO.html
ExpressionView/inst/srcview/org/alivepdf/cells/class-list.html
ExpressionView/inst/srcview/org/alivepdf/cells/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/colors
ExpressionView/inst/srcview/org/alivepdf/colors/CMYKColor.html
ExpressionView/inst/srcview/org/alivepdf/colors/Color.html
ExpressionView/inst/srcview/org/alivepdf/colors/GrayColor.html
ExpressionView/inst/srcview/org/alivepdf/colors/RGBColor.html
ExpressionView/inst/srcview/org/alivepdf/colors/class-list.html
ExpressionView/inst/srcview/org/alivepdf/colors/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/data
ExpressionView/inst/srcview/org/alivepdf/data/Grid.html
ExpressionView/inst/srcview/org/alivepdf/data/GridColumn.html
ExpressionView/inst/srcview/org/alivepdf/data/class-list.html
ExpressionView/inst/srcview/org/alivepdf/data/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/display
ExpressionView/inst/srcview/org/alivepdf/display/Display.html
ExpressionView/inst/srcview/org/alivepdf/display/PageMode.html
ExpressionView/inst/srcview/org/alivepdf/display/class-list.html
ExpressionView/inst/srcview/org/alivepdf/display/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/drawing
ExpressionView/inst/srcview/org/alivepdf/drawing/Caps.html
ExpressionView/inst/srcview/org/alivepdf/drawing/DashedLine.html
ExpressionView/inst/srcview/org/alivepdf/drawing/WindingRule.html
ExpressionView/inst/srcview/org/alivepdf/drawing/class-list.html
ExpressionView/inst/srcview/org/alivepdf/drawing/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/encoding
ExpressionView/inst/srcview/org/alivepdf/encoding/Base64.html
ExpressionView/inst/srcview/org/alivepdf/encoding/BitString.html
ExpressionView/inst/srcview/org/alivepdf/encoding/IntBlock.html
ExpressionView/inst/srcview/org/alivepdf/encoding/IntList.html
ExpressionView/inst/srcview/org/alivepdf/encoding/JPEGEncoder.html
ExpressionView/inst/srcview/org/alivepdf/encoding/PNGEncoder.html
ExpressionView/inst/srcview/org/alivepdf/encoding/class-list.html
ExpressionView/inst/srcview/org/alivepdf/encoding/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/events
ExpressionView/inst/srcview/org/alivepdf/events/PageEvent.html
ExpressionView/inst/srcview/org/alivepdf/events/PagingEvent.html
ExpressionView/inst/srcview/org/alivepdf/events/ProcessingEvent.html
ExpressionView/inst/srcview/org/alivepdf/events/class-list.html
ExpressionView/inst/srcview/org/alivepdf/events/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/fonts
ExpressionView/inst/srcview/org/alivepdf/fonts/CoreFonts.html
ExpressionView/inst/srcview/org/alivepdf/fonts/FontFamily.html
ExpressionView/inst/srcview/org/alivepdf/fonts/FontType.html
ExpressionView/inst/srcview/org/alivepdf/fonts/Style.html
ExpressionView/inst/srcview/org/alivepdf/fonts/class-list.html
ExpressionView/inst/srcview/org/alivepdf/fonts/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/html
ExpressionView/inst/srcview/org/alivepdf/html/HTMLTag.html
ExpressionView/inst/srcview/org/alivepdf/html/class-list.html
ExpressionView/inst/srcview/org/alivepdf/html/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/images
ExpressionView/inst/srcview/org/alivepdf/images/GIFImage.html
ExpressionView/inst/srcview/org/alivepdf/images/IImage.html
ExpressionView/inst/srcview/org/alivepdf/images/ImageFormat.html
ExpressionView/inst/srcview/org/alivepdf/images/ImageHeader.html
ExpressionView/inst/srcview/org/alivepdf/images/JPEGImage.html
ExpressionView/inst/srcview/org/alivepdf/images/PDFImage.html
ExpressionView/inst/srcview/org/alivepdf/images/PNGImage.html
ExpressionView/inst/srcview/org/alivepdf/images/ResizeMode.html
ExpressionView/inst/srcview/org/alivepdf/images/class-list.html
ExpressionView/inst/srcview/org/alivepdf/images/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/layout
ExpressionView/inst/srcview/org/alivepdf/layout/Align.html
ExpressionView/inst/srcview/org/alivepdf/layout/Layout.html
ExpressionView/inst/srcview/org/alivepdf/layout/Orientation.html
ExpressionView/inst/srcview/org/alivepdf/layout/Size.html
ExpressionView/inst/srcview/org/alivepdf/layout/Unit.html
ExpressionView/inst/srcview/org/alivepdf/layout/class-list.html
ExpressionView/inst/srcview/org/alivepdf/layout/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/metrics
ExpressionView/inst/srcview/org/alivepdf/metrics/FontMetrics.html
ExpressionView/inst/srcview/org/alivepdf/metrics/class-list.html
ExpressionView/inst/srcview/org/alivepdf/metrics/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/pages
ExpressionView/inst/srcview/org/alivepdf/pages/Page.html
ExpressionView/inst/srcview/org/alivepdf/pages/class-list.html
ExpressionView/inst/srcview/org/alivepdf/pages/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/pdf
ExpressionView/inst/srcview/org/alivepdf/pdf/PDF.html
ExpressionView/inst/srcview/org/alivepdf/pdf/class-list.html
ExpressionView/inst/srcview/org/alivepdf/pdf/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/saving
ExpressionView/inst/srcview/org/alivepdf/saving/Method.html
ExpressionView/inst/srcview/org/alivepdf/saving/class-list.html
ExpressionView/inst/srcview/org/alivepdf/saving/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/tools
ExpressionView/inst/srcview/org/alivepdf/tools/class-list.html
ExpressionView/inst/srcview/org/alivepdf/tools/package-detail.html
ExpressionView/inst/srcview/org/alivepdf/tools/package.html
ExpressionView/inst/srcview/override.css
ExpressionView/inst/srcview/package-detail.html
ExpressionView/inst/srcview/package-frame.html
ExpressionView/inst/srcview/package-list.html
ExpressionView/inst/srcview/package-summary.html
ExpressionView/inst/srcview/print.css
ExpressionView/inst/srcview/style.css
ExpressionView/inst/srcview/title-bar.html
ExpressionView/man
ExpressionView/man/ExportEV.Rd
ExpressionView/man/ExpressionView-package.Rd
ExpressionView/man/LaunchEV.Rd
ExpressionView/man/OrderEV.Rd
ExpressionView/src
ExpressionView/src/order.cpp
ExpressionView/src/orderclusters.cpp
ExpressionView/src/orderclusters.h
ExpressionView/vignettes
ExpressionView/vignettes/ExpressionView.bib
ExpressionView/vignettes/ExpressionView.format.Rnw
ExpressionView/vignettes/ExpressionView.ordering.Rnw
ExpressionView/vignettes/ExpressionView.tutorial.Rnw
ExpressionView/vignettes/expressionview.xsd
ExpressionView/vignettes/figures
ExpressionView/vignettes/figures/nclusters.pdf
ExpressionView/vignettes/figures/nslots.pdf
ExpressionView/vignettes/figures/ordering.pdf
ExpressionView/vignettes/figures/screenshot.pdf