mirIntegrator: Integrating microRNA expression into signaling pathways for pathway analysis

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

AuthorDiana Diaz <dmd at wayne dot edu>
Date of publicationNone
MaintainerDiana Diaz <dmd@wayne.edu>
LicenseGPL (>=3)
Version1.4.0
http://datad.github.io/mirIntegrator/

View on Bioconductor

Files

mirIntegrator/DESCRIPTION
mirIntegrator/NAMESPACE
mirIntegrator/R
mirIntegrator/R/augment_pathways.R mirIntegrator/R/plot_pathways.R mirIntegrator/R/view_pathways.R
mirIntegrator/build
mirIntegrator/build/vignette.rds
mirIntegrator/data
mirIntegrator/data/GSE43592_mRNA.rda
mirIntegrator/data/GSE43592_miRNA.rda
mirIntegrator/data/augmented_pathways.rda
mirIntegrator/data/datalist
mirIntegrator/data/kegg_pathways.rda
mirIntegrator/data/mirTarBase.rda
mirIntegrator/data/names_pathways.rda
mirIntegrator/inst
mirIntegrator/inst/NEWS
mirIntegrator/inst/doc
mirIntegrator/inst/doc/mirIntegrator.R
mirIntegrator/inst/doc/mirIntegrator.Rnw
mirIntegrator/inst/doc/mirIntegrator.pdf
mirIntegrator/inst/scripts
mirIntegrator/inst/scripts/get_augmented_pathways.R
mirIntegrator/inst/scripts/get_kegg_pathways.R
mirIntegrator/inst/scripts/get_mirTarBase.R
mirIntegrator/inst/scripts/get_names_pathways.R
mirIntegrator/inst/unitTests
mirIntegrator/inst/unitTests/test_datasets.R
mirIntegrator/inst/unitTests/test_integrate.R
mirIntegrator/man
mirIntegrator/man/GSE43592_mRNA.Rd mirIntegrator/man/GSE43592_miRNA.Rd mirIntegrator/man/augmented_pathways.Rd mirIntegrator/man/integrate_mir.Rd mirIntegrator/man/kegg_pathways.Rd mirIntegrator/man/mirTarBase.Rd mirIntegrator/man/names_pathways.Rd mirIntegrator/man/pathways2pdf.Rd mirIntegrator/man/plot_augmented_pathway.Rd mirIntegrator/man/plot_change.Rd mirIntegrator/man/smallest_pathway.Rd
mirIntegrator/tests
mirIntegrator/tests/runTests.R
mirIntegrator/vignettes
mirIntegrator/vignettes/mirIntegrator.Rnw
mirIntegrator/vignettes/mirIntegrator.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.