names_pathways: List of KEGG signaling pathways' names.

Description Usage Value Source References Examples

Description

Names of the KEGG signaling pathways in human obtained with the ROntoTools package. The original KEGG pathways were published by Kanehisa Laboratories, release 73.0+/01-03, Jan 2015.

Usage

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data("names_pathways")

Value

A list of KEGG signaling pathways' names.

Source

Obtained using the ROntoTools package Version 1.2.0 with KEGG database release 73.0+/01-03, Jan 2015. A script that constructs the names_pathways object may be found in 'inst/scripts/get_names_pathways.R', see the example.

References

M. Kanehisa and S. Goto, KEGG: Kyoto Encyclopedia of Genes and Genomes, Nucleic Acids Research, vol. 28, pp. 27-30, January 2000.

C. Voichita, M. Donato, and S. Draghici, Incorporating gene significance in the impact analysis of signaling pathways, in 2012 11th International Conference on Machine Learning and Applications (ICMLA), vol. 1, pp. 126-131, Dec. 2012.

Examples

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 data(names_pathways)
 head(names_pathways)
 
 script <- system.file("scripts", "get_names_pathways.R", 
                      package = "mirIntegrator")
 script
 readLines(script)

mirIntegrator documentation built on Nov. 1, 2018, 3:30 a.m.