keggorthology: graph support for KO, KEGG Orthology

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author
VJ Carey <stvjc@channing.harvard.edu>
Date of publication
None
Maintainer
VJ Carey <stvjc@channing.harvard.edu>
License
Artistic-2.0
Version
2.26.0

View on Bioconductor

Man pages

getKOprobes
obtain probe set IDs associated with a KO term
indRender
indented textual rendering of nodes of a hierarchical graph
keggDF2graph
create a graph from a specific data frame format for KEGG...

Files in this package

keggorthology/DESCRIPTION
keggorthology/NAMESPACE
keggorthology/R
keggorthology/R/getKOtags.R
keggorthology/R/indRender.R
keggorthology/R/keggDF2graph.R
keggorthology/build
keggorthology/build/vignette.rds
keggorthology/data
keggorthology/data/KOgraph.rda
keggorthology/data/keggOrthDF.rda
keggorthology/inst
keggorthology/inst/doc
keggorthology/inst/doc/keggorth.R
keggorthology/inst/doc/keggorth.Rnw
keggorthology/inst/doc/keggorth.pdf
keggorthology/inst/keggHTML
keggorthology/inst/keggHTML/PRE2010
keggorthology/inst/keggHTML/PRE2010/ko00001.keg
keggorthology/inst/keggHTML/dfWdepth.R
keggorthology/inst/keggHTML/get_htext.html
keggorthology/inst/keggHTML/get_htext_2010.html
keggorthology/inst/keggHTML/ko00001.keg
keggorthology/inst/keggHTML/parseKeg.R
keggorthology/inst/keggHTML/wget.keg
keggorthology/man
keggorthology/man/getKOprobes.Rd
keggorthology/man/indRender.Rd
keggorthology/man/keggDF2graph.Rd
keggorthology/vignettes
keggorthology/vignettes/keggorth.Rnw