keggorthology: graph support for KO, KEGG Orthology
Version 2.28.0

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

AuthorVJ Carey <stvjc@channing.harvard.edu>
Bioconductor views GraphAndNetwork KEGG Pathways Visualization
Date of publicationNone
MaintainerVJ Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version2.28.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("keggorthology")

Popular man pages

getKOprobes: obtain probe set IDs associated with a KO term
indRender: indented textual rendering of nodes of a hierarchical graph
keggDF2graph: create a graph from a specific data frame format for KEGG...
See all...

All man pages Function index File listing

Man pages

getKOprobes: obtain probe set IDs associated with a KO term
indRender: indented textual rendering of nodes of a hierarchical graph
keggDF2graph: create a graph from a specific data frame format for KEGG...

Functions

KOgraph Man page
getKOprobes Man page Source code
getKOtags Man page Source code
indRender Man page Source code
keggDF2graph Man page Source code
keggOrthDF Man page

Files

DESCRIPTION
NAMESPACE
R
R/getKOtags.R
R/indRender.R
R/keggDF2graph.R
build
build/vignette.rds
data
data/KOgraph.rda
data/keggOrthDF.rda
inst
inst/doc
inst/doc/keggorth.R
inst/doc/keggorth.Rnw
inst/doc/keggorth.pdf
inst/keggHTML
inst/keggHTML/PRE2010
inst/keggHTML/PRE2010/ko00001.keg
inst/keggHTML/dfWdepth.R
inst/keggHTML/get_htext.html
inst/keggHTML/get_htext_2010.html
inst/keggHTML/ko00001.keg
inst/keggHTML/parseKeg.R
inst/keggHTML/wget.keg
man
man/getKOprobes.Rd
man/indRender.Rd
man/keggDF2graph.Rd
vignettes
vignettes/keggorth.Rnw
keggorthology documentation built on May 20, 2017, 10:58 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.