WubingZhang/MAGeCKFlute: Integrative analysis pipeline for pooled CRISPR functional genetic screens
Version 0.99.17

MAGeCKFlute is designed to surporting downstream analysis, utilizing the gene summary data provided through MAGeCK or MAGeCK-VISPR. Quality control, normalization, and screen hit identification for CRISPR screen data are performed in pipeline. Identified hits within the pipeline are categorized based on experimental design, and are subsequently interpreted by functional enrichment analysis.

Getting started

Package details

AuthorWubing Zhang, Feizhen Wu, Binbin Wang
Bioconductor views CRISPR DifferentialExpression ExperimentalDesign FunctionalGenomics FunctionalPrediction GeneExpression GeneSetEnrichment GeneTarget GeneticVariability GenomicVariation GraphAndNetwork KEGG Metabolomics Microarray MultipleComparison Normalization Pathways PooledScreens Proteomics QualityControl RNASeq Sequencing SystemsBiology Visualization
MaintainerWubing Zhang<[email protected]>
LicenseGPL (>=3)
Version0.99.17
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("WubingZhang/MAGeCKFlute")
WubingZhang/MAGeCKFlute documentation built on Nov. 24, 2017, 6:43 a.m.