getOrtAnn: Retreive reference orthologs annotation.

In WubingZhang/MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Retreive reference orthologs annotation.

Description

Retreive reference orthologs annotation.

Usage

getOrtAnn(fromOrg = "mmu", toOrg = "hsa", update = FALSE)

Arguments

fromOrg	Character, hsa (default), bta, cfa, mmu, ptr, rno, ssc are optional.
toOrg	Character, hsa (default), bta, cfa, mmu, ptr, rno, ssc are optional.
update	Boolean, indicating whether download recent annotation from NCBI.

Value

A data frame.

Author(s)

Wubing Zhang

Examples

## Not run: 
  ann = getOrtAnn("mmu", "hsa")
  head(ann)

## End(Not run)

WubingZhang/MAGeCKFlute documentation built on Jan. 27, 2024, 2:43 p.m.