Files in WubingZhang/MAGeCKFlute
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

.gitignore
DESCRIPTION
MAGeCKFlute.Rproj
NAMESPACE
NEWS
R/.ipynb_checkpoints/EnrichAnalyzer-checkpoint.R R/.ipynb_checkpoints/EnrichSquare-checkpoint.R R/.ipynb_checkpoints/EnrichedFilter-checkpoint.R R/.ipynb_checkpoints/EnrichedGeneView-checkpoint.R R/.ipynb_checkpoints/EnrichedView-checkpoint.R R/.ipynb_checkpoints/IdentBarVIew-checkpoint.R R/.ipynb_checkpoints/enrich.GSE-checkpoint.R R/.ipynb_checkpoints/enrich.HGT-checkpoint.R R/.ipynb_checkpoints/enrich.ORT-checkpoint.R R/.ipynb_checkpoints/gsGetter-checkpoint.R R/.ipynb_checkpoints/reexport-checkpoint.R R/BarView.R R/BatchRemove.R R/ConsistencyView.R R/DensityView.R R/EnrichAB.R R/EnrichAnalyzer.R R/EnrichSquare.R R/EnrichedFilter.R R/EnrichedGeneView.R R/EnrichedView.R R/FluteMLE.R R/FluteRRA.R R/HeatmapView.R R/IdentBarVIew.R R/IncorporateDepmap.R R/KeggPathwayView.R R/MAView.R R/MapRatesView.R R/NormalizeBeta.R R/RankView.R R/ReadBeta.R R/ReadRRA.R R/ReadsgRRA.R R/ScatterView.R R/Selector.R R/SquareView.R R/TransGeneID.R R/ViolinView.R R/VolcanoView.R R/enrich.GSE.R R/enrich.HGT.R R/enrich.ORT.R R/gsGetter.R R/hclustView.R R/readGMT.R R/reexport.R R/sgRankView.R README.md
inst/extdata/GeneID_Annotation_hsa.rds
inst/extdata/GeneID_Annotation_hsa_mmu.rds
inst/extdata/GeneID_Annotation_mmu.rds
inst/extdata/GeneID_Annotation_mmu_hsa.rds
inst/extdata/HOM_GeneID_Annotation_mmu_hsa.rds
inst/extdata/ProteinID_Annotation_hsa.rds
inst/extdata/ProteinID_Annotation_mmu.rds
inst/extdata/Zuber_Essential.rds
inst/extdata/corum.all.entrez.hsa.rds
inst/extdata/corum.all.entrez.mmu.rds
inst/extdata/go.all.entrez.mmu.rds
inst/extdata/kegg.all.entrez.hsa.rds
inst/extdata/kegg.all.entrez.mmu.rds
inst/extdata/reactome.all.entrez.hsa.rds
inst/extdata/reactome.all.entrez.mmu.rds
inst/extdata/testdata/countsummary.txt
inst/extdata/testdata/mle.gene_summary.txt
inst/extdata/testdata/rra.gene_summary.txt
inst/extdata/testdata/rra.sgrna_summary.txt
man/BarView.Rd man/BatchRemove.Rd man/ConsistencyView.Rd man/CutoffCalling.Rd man/DensityDiffView.Rd man/DensityView.Rd man/EnrichAB.Rd man/EnrichAnalyzer.Rd man/EnrichSquare.Rd man/EnrichedFilter.Rd man/EnrichedGeneView.Rd man/EnrichedView.Rd man/FluteMLE.Rd man/FluteRRA.Rd man/HeatmapView.Rd man/IdentBarView.Rd man/IncorporateDepmap.Rd man/MAView.Rd man/MapRatesView.Rd man/NormalizeBeta.Rd man/OmitCommonEssential.Rd man/RankView.Rd man/ReadBeta.Rd man/ReadGMT.Rd man/ReadRRA.Rd man/ReadsgRRA.Rd man/ResembleDepmap.Rd man/ScatterView.Rd man/Selector.Rd man/SquareView.Rd man/TransGeneID.Rd man/ViolinView.Rd man/VolcanoView.Rd man/arrangePathview.Rd man/enrich.GSE.Rd man/enrich.HGT.Rd man/enrich.ORT.Rd man/getCols.Rd man/getGeneAnn.Rd man/getOrg.Rd man/getOrtAnn.Rd man/gsGetter.Rd man/hclustView.Rd man/loadDepmap.Rd man/noEnrichPlot.Rd man/normalize.loess.Rd man/reexports.Rd man/retrieve_gs.Rd man/sgRankView.Rd man/writeGMT.Rd vignettes/MAGeCKFlute.Rmd vignettes/MAGeCKFlute_enrichment.Rmd
vignettes/library.bib
WubingZhang/MAGeCKFlute documentation built on Jan. 27, 2024, 2:43 p.m.