DensityDiffView: Density plot

In WubingZhang/MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Density plot

Description

Plot the distribution of score differences between treatment and control.

Usage

DensityDiffView(
  dat,
  ctrlname = "Control",
  treatname = "Treatment",
  main = NULL,
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

dat	A data frame.
ctrlname	A character, specifying the control samples.
treatname	A character, specifying the treatment samples.
main	A character, specifying title.
filename	A character, specifying a file name to create on disk. Set filename to be "NULL", if don't want to save the figure.
width	Numeric, specifying width of figure.
height	Numeric, specifying height of figure.
...	Other parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

Examples

file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
# Density plot of beta score deviation between control and treatment
DensityDiffView(dd, ctrlname = "Pmel1_Ctrl", treatname = "Pmel1")

WubingZhang/MAGeCKFlute documentation built on Jan. 27, 2024, 2:43 p.m.