DensityView: Density plot

In WubingZhang/MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens

Density plot

Description

Plot the distribution of numeric vectors with the same length.

Usage

DensityView(
  dat,
  samples = NULL,
  main = NULL,
  xlab = "Score",
  filename = NULL,
  width = 5,
  height = 4,
  ...
)

Arguments

dat	A data frame.
samples	A character vector, specifying columns in dat for plotting.
main	A character, specifying title.
xlab	A character, specifying title of x-axis.
filename	A character, specifying a file name to create on disk. Set filename to be "NULL", if don't want to save the figure.
width	Numeric, specifying width of figure.
height	Numeric, specifying height of figure.
...	Other available parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Wubing Zhang

See Also

ViolinView

Examples

file3 = file.path(system.file("extdata", package = "MAGeCKFlute"),
"testdata/mle.gene_summary.txt")
dd = ReadBeta(file3)
DensityView(dd, samples=c("Pmel1_Ctrl", "Pmel1"))
#or
DensityView(dd[,-1])

WubingZhang/MAGeCKFlute documentation built on Jan. 27, 2024, 2:43 p.m.