EnrichedFilter: Simplify the enrichment results based on Jaccard index
In WubingZhang/MAGeCKFlute: Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
View source: R/EnrichedFilter.R
View source: R/.ipynb_checkpoints/EnrichedFilter-checkpoint.R
EnrichedFilter R Documentation
Simplify the enrichment results based on Jaccard index
Description
Simplify the enrichment results based on Jaccard index
Usage
EnrichedFilter(enrichment = enrichment, cutoff = 0.8)
Arguments
enrichment
A data frame of enrichment result or an enrichResult object.
cutoff
A numeric, specifying the cutoff of Jaccard index between two pathways.
Value
A data frame.
Author(s)
Yihan Xiao
Examples
data(geneList, package = "DOSE")
## Not run:
enrichRes <- enrich.HGT(geneList, keytype = "entrez")
EnrichedFilter(enrichRes)
## End(Not run)
WubingZhang/MAGeCKFlute documentation built on Jan. 27, 2024, 2:43 p.m.
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View source: R/EnrichedFilter.R View source: R/.ipynb_checkpoints/EnrichedFilter-checkpoint.R
| EnrichedFilter | R Documentation |
Simplify the enrichment results based on Jaccard index
Description
Simplify the enrichment results based on Jaccard index
Usage
EnrichedFilter(enrichment = enrichment, cutoff = 0.8)
Arguments
enrichment |
A data frame of enrichment result or an enrichResult object. |
cutoff |
A numeric, specifying the cutoff of Jaccard index between two pathways. |
Value
A data frame.
Author(s)
Yihan Xiao
Examples
data(geneList, package = "DOSE")
## Not run:
enrichRes <- enrich.HGT(geneList, keytype = "entrez")
EnrichedFilter(enrichRes)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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