PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.
|Author||Sarah Song, Mik Black|
|Bioconductor views||DifferentialExpression GeneExpression KEGG Microarray Network|
|Date of publication||None|
|Maintainer||Sarah Song <firstname.lastname@example.org>|
|License||GPL (>= 2)|
aveProbe: Transform Affymetrix data so that unique genes with multiple...
corplot: Produce a plot for jointly visualizing pooled correlation...
corplot2: Produce a plot for jointly visualizing unpooled correlation...
getImat: Generate an indicator matrix
pcot2: Principal Coordinates and Hotelling's T-Square
pcot2-internal: Internal PCOT2 functions
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