pcot2: Principal Coordinates and Hotelling's T-Square method

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PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author
Sarah Song, Mik Black
Date of publication
None
Maintainer
Sarah Song <qson003@stat.auckland.ac.nz>
License
GPL (>= 2)
Version
1.42.0

View on Bioconductor

Man pages

aveProbe
Transform Affymetrix data so that unique genes with multiple...
corplot
Produce a plot for jointly visualizing pooled correlation...
corplot2
Produce a plot for jointly visualizing unpooled correlation...
getImat
Generate an indicator matrix
pcot2
Principal Coordinates and Hotelling's T-Square
pcot2-internal
Internal PCOT2 functions

Files in this package

pcot2/DESCRIPTION
pcot2/NAMESPACE
pcot2/R
pcot2/R/Cor.R
pcot2/R/aveExprs.R
pcot2/R/aveProbe.R
pcot2/R/corplot.R
pcot2/R/corplot2.R
pcot2/R/geneLocator.R
pcot2/R/getImat.R
pcot2/R/pco.R
pcot2/R/pcot2.R
pcot2/R/plotCor.R
pcot2/R/rb.R
pcot2/R/rg.R
pcot2/R/t2.R
pcot2/R/t2.permu.R
pcot2/R/t2.unequ.R
pcot2/R/wb.R
pcot2/build
pcot2/build/vignette.rds
pcot2/inst
pcot2/inst/doc
pcot2/inst/doc/pcot2.R
pcot2/inst/doc/pcot2.Rnw
pcot2/inst/doc/pcot2.pdf
pcot2/man
pcot2/man/aveProbe.Rd
pcot2/man/corplot.Rd
pcot2/man/corplot2.Rd
pcot2/man/getImat.Rd
pcot2/man/pcot2-internal.Rd
pcot2/man/pcot2.Rd
pcot2/vignettes
pcot2/vignettes/HowToUseGeneLocator.pdf
pcot2/vignettes/pcot2.Rnw