PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author | Sarah Song, Mik Black |

Date of publication | None |

Maintainer | Sarah Song <qson003@stat.auckland.ac.nz> |

License | GPL (>= 2) |

Version | 1.42.0 |

**aveProbe:** Transform Affymetrix data so that unique genes with multiple...

**corplot:** Produce a plot for jointly visualizing pooled correlation...

**corplot2:** Produce a plot for jointly visualizing unpooled correlation...

**getImat:** Generate an indicator matrix

**pcot2:** Principal Coordinates and Hotelling's T-Square

**pcot2-internal:** Internal PCOT2 functions

pcot2/DESCRIPTION

pcot2/NAMESPACE

pcot2/R

pcot2/R/Cor.R
pcot2/R/aveExprs.R
pcot2/R/aveProbe.R
pcot2/R/corplot.R
pcot2/R/corplot2.R
pcot2/R/geneLocator.R
pcot2/R/getImat.R
pcot2/R/pco.R
pcot2/R/pcot2.R
pcot2/R/plotCor.R
pcot2/R/rb.R
pcot2/R/rg.R
pcot2/R/t2.R
pcot2/R/t2.permu.R
pcot2/R/t2.unequ.R
pcot2/R/wb.R
pcot2/build

pcot2/build/vignette.rds

pcot2/inst

pcot2/inst/doc

pcot2/inst/doc/pcot2.R

pcot2/inst/doc/pcot2.Rnw

pcot2/inst/doc/pcot2.pdf

pcot2/man

pcot2/man/aveProbe.Rd
pcot2/man/corplot.Rd
pcot2/man/corplot2.Rd
pcot2/man/getImat.Rd
pcot2/man/pcot2-internal.Rd
pcot2/man/pcot2.Rd
pcot2/vignettes

pcot2/vignettes/HowToUseGeneLocator.pdf

pcot2/vignettes/pcot2.Rnw

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.