This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
|Author||Martin Morgan, Seth Falcon, Robert Gentleman|
|Date of publication||None|
|Maintainer||Bioconductor Package Maintainer <email@example.com>|
CollectionType-class: Class "CollectionType"
CollectionType-constructors: Collection Type Class Constructors
details-methods: Methods for Displaying Detailed GeneSet Information
GeneColorSet-class: Class "GeneColorSet"
GeneColorSet-methods: Methods to Construct "GeneColorSet" Instances
GeneIdentifierType-class: Class "GeneIdentifierType"
GeneIdentifierType-constructors: Gene Identifier Class Constructors
GeneSet-class: Class "GeneSet"
GeneSetCollection-class: Class "GeneSetCollection"
GeneSetCollection-methods: Methods to construct GeneSetCollection instances
GeneSet-methods: Methods to construct GeneSet instances
getObjects: Read and write gene sets from Broad or GMT formats
getOBOCollection: Read OBO-specified Gene Ontology Collections
goSlim-methods: Methods for Function goSlim in Package 'GSEABase'
GSEABase-package: Gene set enrichment data structures and methods
incidence-methods: Methods for Constructing Incidence Matricies Between GeneSets
mapIdentifiers-methods: Methods for Function mapIdentifiers in Package 'GSEABase'
OBOCollection-class: Class "OBOCollection"