getOBOCollection parses a uri (file or internet location)
encoded following the OBO specification defined by the Gene Onotology
A file name or URL containing gene sets encoded following the OBO specification.
A character vector of evidence codes.
Further arguments passed to the
getOBOCollection returns an
OBOCollection of gene
sets. The gene set is constructed by parsing the file for
TERM stanzas. The parser does not currently support all
features of OBO, e.g., the ability to import additional files.
Martin Morgan <firstname.lastname@example.org>
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## 'fl' could also be a URI fl <- system.file("extdata", "goslim_plant.obo", package="GSEABase") getOBOCollection(fl) # GeneSetCollection of 2 sets ## Not run: ## Download from the internet fl <- "http://www.geneontology.org/GO_slims/goslim_plant.obo" getOBOCollection(fl, evidenceCode="TAS") ## End(Not run)
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