StarBioTrek: StarBioTrek

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")
AuthorClaudia Cava, Isabella Castiglioni
Bioconductor views GeneRegulation KEGG Network Pathways
Date of publicationNone
MaintainerClaudia Cava <claudia.cava@ibfm.cnr.it>
LicenseGPL (>= 3)
Version1.0.3
https://github.com/claudiacava/StarBioTrek

View on Bioconductor

Functions

average Man page
Data_CANCER_normUQ_filt Man page
ds_score_crtlk Man page
euc_dist_crtlk Man page
GE_matrix Man page
getKEGGdata Man page
getNETdata Man page
list_path_net Man page
list_path_plot Man page
matrix_plot Man page
netw Man page
norm Man page
path Man page
path_net Man page
plotting_cross_talk Man page
process_matrix Man page
proc_path Man page
score_euc_dist Man page
select_class Man page
SelectedSample Man page
StarBioTrek Man page
StarBioTrek-package Man page
st_dv Man page
svm_classification Man page
tumo Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/StarBioTrek.r R/getdata.R R/internal.R R/path_star.R
README.md
build
build/vignette.rds
data
data/Data_CANCER_normUQ_filt.rda
data/datalist
data/list_path_plot.rda
data/netw.rda
data/norm.rda
data/path.rda
data/score_euc_dist.rda
data/tumo.rda
inst
inst/CITATION
inst/doc
inst/doc/StarBioTrek.R
inst/doc/StarBioTrek.Rmd
inst/doc/StarBioTrek.html
inst/doc/StarBioTrek_Application_Examples.R
inst/doc/StarBioTrek_Application_Examples.Rmd
inst/doc/StarBioTrek_Application_Examples.pdf
man
man/Data_CANCER_normUQ_filt.Rd man/GE_matrix.Rd man/SelectedSample.Rd man/StarBioTrek.Rd man/average.Rd man/ds_score_crtlk.Rd man/euc_dist_crtlk.Rd man/getKEGGdata.Rd man/getNETdata.Rd man/list_path_net.Rd man/list_path_plot.Rd man/matrix_plot.Rd man/netw.Rd man/norm.Rd man/path.Rd man/path_net.Rd man/plotting_cross_talk.Rd man/proc_path.Rd man/process_matrix.Rd man/score_euc_dist.Rd man/select_class.Rd man/st_dv.Rd man/svm_classification.Rd man/tumo.Rd
vignettes
vignettes/StarBioTrek.Rmd
vignettes/StarBioTrek_Application_Examples.Rmd
vignettes/plot_path.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.