StarBioTrek: StarBioTrek

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

AuthorClaudia Cava, Isabella Castiglioni
Date of publicationNone
MaintainerClaudia Cava <claudia.cava@ibfm.cnr.it>
LicenseGPL (>= 3)
Version1.0.3
https://github.com/claudiacava/StarBioTrek

View on Bioconductor

Functions

average Man page
Data_CANCER_normUQ_filt Man page
ds_score_crtlk Man page
euc_dist_crtlk Man page
GE_matrix Man page
getKEGGdata Man page
getNETdata Man page
list_path_net Man page
list_path_plot Man page
matrix_plot Man page
netw Man page
norm Man page
path Man page
path_net Man page
plotting_cross_talk Man page
process_matrix Man page
proc_path Man page
score_euc_dist Man page
select_class Man page
SelectedSample Man page
StarBioTrek Man page
StarBioTrek-package Man page
st_dv Man page
svm_classification Man page
tumo Man page

Files

StarBioTrek/DESCRIPTION
StarBioTrek/NAMESPACE
StarBioTrek/NEWS
StarBioTrek/R
StarBioTrek/R/StarBioTrek.r
StarBioTrek/R/getdata.R StarBioTrek/R/internal.R StarBioTrek/R/path_star.R
StarBioTrek/README.md
StarBioTrek/build
StarBioTrek/build/vignette.rds
StarBioTrek/data
StarBioTrek/data/Data_CANCER_normUQ_filt.rda
StarBioTrek/data/datalist
StarBioTrek/data/list_path_plot.rda
StarBioTrek/data/netw.rda
StarBioTrek/data/norm.rda
StarBioTrek/data/path.rda
StarBioTrek/data/score_euc_dist.rda
StarBioTrek/data/tumo.rda
StarBioTrek/inst
StarBioTrek/inst/CITATION
StarBioTrek/inst/doc
StarBioTrek/inst/doc/StarBioTrek.R
StarBioTrek/inst/doc/StarBioTrek.Rmd
StarBioTrek/inst/doc/StarBioTrek.html
StarBioTrek/inst/doc/StarBioTrek_Application_Examples.R
StarBioTrek/inst/doc/StarBioTrek_Application_Examples.Rmd
StarBioTrek/inst/doc/StarBioTrek_Application_Examples.pdf
StarBioTrek/man
StarBioTrek/man/Data_CANCER_normUQ_filt.Rd StarBioTrek/man/GE_matrix.Rd StarBioTrek/man/SelectedSample.Rd StarBioTrek/man/StarBioTrek.Rd StarBioTrek/man/average.Rd StarBioTrek/man/ds_score_crtlk.Rd StarBioTrek/man/euc_dist_crtlk.Rd StarBioTrek/man/getKEGGdata.Rd StarBioTrek/man/getNETdata.Rd StarBioTrek/man/list_path_net.Rd StarBioTrek/man/list_path_plot.Rd StarBioTrek/man/matrix_plot.Rd StarBioTrek/man/netw.Rd StarBioTrek/man/norm.Rd StarBioTrek/man/path.Rd StarBioTrek/man/path_net.Rd StarBioTrek/man/plotting_cross_talk.Rd StarBioTrek/man/proc_path.Rd StarBioTrek/man/process_matrix.Rd StarBioTrek/man/score_euc_dist.Rd StarBioTrek/man/select_class.Rd StarBioTrek/man/st_dv.Rd StarBioTrek/man/svm_classification.Rd StarBioTrek/man/tumo.Rd
StarBioTrek/vignettes
StarBioTrek/vignettes/StarBioTrek.Rmd
StarBioTrek/vignettes/StarBioTrek_Application_Examples.Rmd
StarBioTrek/vignettes/plot_path.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.