GE_matrix: Get human KEGG pathway data and a gene expression matrix in...

Description Usage Arguments Value Examples

View source: R/path_star.R

Description

GE_matrix creates a list of gene expression for pathways given by the user.

Usage

1
GE_matrix(DataMatrix, genes.by.pathway)

Arguments

DataMatrix

gene expression matrix (eg.TCGA data)

genes.by.pathway

a list of pathway data as provided by GetData and ConvertedID_genes

Value

a list for each pathway ( gene expression level belong to that pathway)

Examples

1
list_path_gene<-GE_matrix(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])

StarBioTrek documentation built on Nov. 8, 2020, 8:02 p.m.