GE_matrix_mean: Get human KEGG pathway data and a gene expression matrix in...
In StarBioTrek: StarBioTrek
Description
Usage
Arguments
Value
Examples
Description
GE_matrix creates a matrix of mean gene expression levels for pathways given by the user.
Usage
1
GE_matrix_mean(DataMatrix, genes.by.pathway)
Arguments
DataMatrix
gene expression matrix (eg.TCGA data)
genes.by.pathway
list of pathway data as provided by getKEGGdata
Value
a matrix for each pathway (mean gene expression level belong to that pathway)
Examples
1
list_path_plot<-GE_matrix_mean(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])
StarBioTrek documentation built on Nov. 8, 2020, 8:02 p.m.
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Description Usage Arguments Value Examples
Description
GE_matrix creates a matrix of mean gene expression levels for pathways given by the user.
Usage
1 | GE_matrix_mean(DataMatrix, genes.by.pathway)
|
Arguments
DataMatrix |
gene expression matrix (eg.TCGA data) |
genes.by.pathway |
list of pathway data as provided by getKEGGdata |
Value
a matrix for each pathway (mean gene expression level belong to that pathway)
Examples
1 | list_path_plot<-GE_matrix_mean(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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