getNETdata: Get network data from GeneMania.

In StarBioTrek: StarBioTrek

Description

getNETdata creates a data frame with network data. Network category can be filtered among: physical interactions, co-localization, genetic interactions and shared protein domain.

Usage

getNETdata(network, organismID = NULL)

Arguments

network	variable. The user can use the following parameters based on the network types to be used. PHint for Physical_interactions, COloc for Co-localization, GENint for Genetic_interactions and SHpd for Shared_protein_domains
organismID	organism==NULL default value is homo sapiens.

Value

list with gene-gene (or protein-protein interactions)

Examples

## Not run: 
organismID="Saccharomyces_cerevisiae"
netw<-getNETdata(network="SHpd",organismID)
## End(Not run)

StarBioTrek documentation built on Nov. 8, 2020, 8:02 p.m.