getNETdata: Get network data.

Description

getNETdata creates a data frame with network data. Network category can be filtered among: physical interactions, co-localization, genetic interactions and shared protein domain.

Usage

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getNETdata(network, organism = NULL)

Arguments

network

variable. The user can use the following parameters based on the network types to be used. PHint for Physical_interactions, COloc for Co-localization, GENint for Genetic_interactions and SHpd for Shared_protein_domains

organism

organism==NULL default value is homo sapiens

Value

dataframe with gene-gene (or protein-protein interactions)

Examples

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organism="Saccharomyces_cerevisiae"
netw<-getNETdata(network="SHpd",organism)

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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