Description Usage Arguments Value Examples
svm class creates a list with AUC, Accuracy, Sensitivity, Specificity values
1 | svm_classification(TCGA_matrix, tumour, normal, nfs)
|
TCGA_matrix |
gene expression matrix where the first two columns represent the interacting pathways. |
tumour |
barcode samples for a class |
normal |
barcode samples for another class |
nfs |
nfs split data into a training and test set |
Target |
label for the classes |
a list with AUC value for pairwise pathway
1 2 3 4 5 | ## Not run:
nf <- 60
res_class<-svm_classification(TCGA_matrix=score_euc_dista[1:30,],nfs=nf,
normal=colnames(norm[,1:10]),tumour=colnames(tumo[,1:10]))
## End(Not run)
|
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