MS_reactionNetwork: Build reaction-compound network
In MetaboSignal: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Description
Usage
Arguments
Value
Note
Examples
View source: R/MS_reactionNetwork.R
Description
This function generates a directed reaction-compound network. The network is formalized
as a three-column matrix, where each row represents an edge connecting two nodes
(from source to target).
Usage
1
MS_reactionNetwork(metabo_paths)
Arguments
metabo_paths
character vector containing the KEGG IDs of the metabolic
pathways of interest. See functions "MS_keggFinder( )" and "MS_getPathIds( )".
Value
A three-column matrix where each row represents an edge between two nodes.
Note
Reaction directionality reported in KEGG has been cross-validated with published
literature (Duarte et al., 2007).
Examples
1
reaction_network <- MS_reactionNetwork(metabo_paths = c("rno00010", "rno00562"))
MetaboSignal documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Value Note Examples
View source: R/MS_reactionNetwork.R
Description
This function generates a directed reaction-compound network. The network is formalized as a three-column matrix, where each row represents an edge connecting two nodes (from source to target).
Usage
1 | MS_reactionNetwork(metabo_paths)
|
Arguments
metabo_paths |
character vector containing the KEGG IDs of the metabolic pathways of interest. See functions "MS_keggFinder( )" and "MS_getPathIds( )". |
Value
A three-column matrix where each row represents an edge between two nodes.
Note
Reaction directionality reported in KEGG has been cross-validated with published literature (Duarte et al., 2007).
Examples
1 | reaction_network <- MS_reactionNetwork(metabo_paths = c("rno00010", "rno00562"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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