API for MetaboSignal
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Global functions
ASP_paths Source code
BW_ranked_SP Source code
From_geneID_to_symbol Source code
MS2_mergeNetworks Man page Source code
MS2_ppiNetwork Man page Source code
MS_FindCompound Source code
MS_FindOrganism Source code
MS_FindPathway Source code
MS_changeNames Man page Source code
MS_convertGene Man page Source code
MS_distances Man page Source code
MS_exportCytoscape Man page Source code
MS_findMappedNodes Man page Source code
MS_getPathIds Man page Source code
MS_interactionType Source code
MS_keggFinder Man page Source code
MS_keggNetwork Man page Source code
MS_nodeBW Man page Source code
MS_reactionNetwork Man page Source code
MS_removeDrugs Man page Source code
MS_removeNode Man page Source code
MS_replaceNode Man page Source code
MS_shortestPaths Man page Source code
MS_shortestPathsNetwork Man page Source code
MS_tissueFilter Man page Source code
MS_topologyFilter Man page Source code
Match Source code
MetaboSignal_table Man page
add_reaction_edge Source code
bind_reaction_gene Source code
build_RG_edge Source code
build_signal_edges Source code
check_matrix_v2 Source code
check_mode_type Source code
collapse_interactions Source code Source code
conv_entrez_kegg Source code
conv_entrez_symbol Source code
convertTable Source code
cyto_directionality Source code
directionality_reactions Man page
find_autoedges Source code
find_node_index Source code
gene_SP_v2 Source code
get_bw_score Source code
get_global_BW_score Source code
get_interactiontype Source code Source code
get_metabonet Source code
get_metabonetR Source code
get_molecule_type Source code
get_reaction_type Source code
get_signaling_type Source code
get_signalnet Source code
get_source Source code
get_tissue_level Source code
hpaNormalTissue Man page
igraph_edited Source code
keggNet_example Man page
kegg_pathways Man page
link_hsagene_ensembl Source code
link_kogene Source code
link_reaction_gene Source code
map_interaction_type Source code
map_interactions Source code
match_KEGG Source code
merge_interactions Source code
mergedNet_example Man page
metabolic_matrix Source code
metabolite_SP Source code
network_features Source code
network_from_path Source code
network_names Source code
new_edge Source code
path_as_network Source code
ppiNet_example Man page
regulatory_interactions Man page
signaling_matrix Source code
unique_symbol_ensembl Source code
MetaboSignal documentation built on Nov. 1, 2018, 4:42 a.m.