MS_removeNode: Remove undesired nodes from the network
In MetaboSignal: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Description
Usage
Arguments
Value
Examples
View source: R/Find_support_functions.R
Description
This function allows removing undesired nodes from the network-table.
Usage
1
MS_removeNode(nodes, network_table)
Arguments
nodes
character vector containing the node IDs to be removed.
network_table
three-column matrix where each row represents and edge
between two nodes. See function "MS_keegNetwork( )".
Value
A three-column matrix corresponding to the input network-table without the undesired nodes.
Examples
1
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5
6
data(MetaboSignal_table)
# Remove glucose nodes
glucoseRemoved <- MS_removeNode(nodes = c("cpd:C00267", "cpd:C00221", "cpd:C00031"),
MetaboSignal_table)
MetaboSignal documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Value Examples
View source: R/Find_support_functions.R
Description
This function allows removing undesired nodes from the network-table.
Usage
1 | MS_removeNode(nodes, network_table)
|
Arguments
nodes |
character vector containing the node IDs to be removed. |
network_table |
three-column matrix where each row represents and edge between two nodes. See function "MS_keegNetwork( )". |
Value
A three-column matrix corresponding to the input network-table without the undesired nodes.
Examples
1 2 3 4 5 6 | data(MetaboSignal_table)
# Remove glucose nodes
glucoseRemoved <- MS_removeNode(nodes = c("cpd:C00267", "cpd:C00221", "cpd:C00031"),
MetaboSignal_table)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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