SBGNview is an R package for visualizing omics data on SBGN pathway maps. Given omics data and a SBGN-ML file with layout information, SBGNview can display omics data as colors on glyphs and output image files. SBGNview provides extensive options to control glyph and edge features (e.g. color, line width etc.). To facilitate pathway based analysis, SBGNview also provides functions to extract molecule sets from SBGN-ML files. SBGNview can map a large collection of gene, protein and compound ID typs to glyphs.
|Author||Xiaoxi Dong, Weijun Luo|
|Bioconductor views||DifferentialExpression GeneExpression GeneSetEnrichment GeneTarget Genetics GraphAndNetwork Metabolomics Microarray Pathways Proteomics RNASeq Sequencing SystemsBiology Visualization|
|Maintainer||Xiaoxi Dong <firstname.lastname@example.org>|
|Package repository||View on GitHub|
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