chemokine/OmicsSBGN: Overlay omics data onto SBGN pathway diagram

SBGNview is an R package for visualizing omics data on SBGN pathway maps. Given omics data and a SBGN-ML file with layout information, SBGNview can display omics data as colors on glyphs and output image files. SBGNview provides extensive options to control glyph and edge features (e.g. color, line width etc.). To facilitate pathway based analysis, SBGNview also provides functions to extract molecule sets from SBGN-ML files. SBGNview can map a large collection of gene, protein and compound ID typs to glyphs.

Getting started

Package details

Author Xiaoxi Dong, Weijun Luo
Bioconductor views DifferentialExpression GeneExpression GeneSetEnrichment GeneTarget Genetics GraphAndNetwork Metabolomics Microarray Pathways Proteomics RNASeq Sequencing SystemsBiology Visualization
MaintainerXiaoxi Dong <>
Licensefile LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
chemokine/OmicsSBGN documentation built on June 27, 2019, 7:52 p.m.