download.sbgn.file: Download pre-generated SBGN-ML file from GitHub

In chemokine/OmicsSBGN: Overlay omics data onto SBGN pathway diagram

Description

This function can download our pre-generated SBGN-ML files from GitHub repository.

Usage

download.sbgn.file(pathway.id, download.folder = ".")

Arguments

pathway.id	The ID of pathway. It is a pathway database specific ID. For accepted pathway IDs, please check data("pathways.info"). IDs are in column "pathway.id" (pathways.info[,"pathway.id"])
download.folder	The output folder to store downloaded SBGN-ML files.

Value

A character string. The path to the downloaded SBGN-ML file.

Examples

data("pathways.info")
data("sbgn.xmls")
input.sbgn = download.sbgn.file(
                  pathway.id = pathways.info[1,"pathway.id"],
                  download.folder = "./")

chemokine/OmicsSBGN documentation built on June 27, 2019, 7:52 p.m.