ubioinformat/TraRe: Transcriptional Rewiring

TraRe (Transcriptional Rewiring) is an R package which contains the necessary tools to carry out several functions. Identification of module-based gene regulatory networks (GRN); score-based classification of these modules via a rewiring test; visualization of rewired modules to analyze condition-based GRN deregulation and drop out genes recovering via cliques methodology. For each tool, an html report can be generated containing useful information about the generated GRN and statistical data about the performed tests. These tools have been developed considering sequenced data (RNA-seq).

Getting started

Package details

Bioconductor views Bayesian Classification GeneRegulation GeneTarget GraphAndNetwork RNASeq
LicenseMIT + file LICENSE
URL https://github.com/ubioinformat/TraRe/tree/master
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ubioinformat/TraRe documentation built on July 9, 2023, 4:56 a.m.