pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways

PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.

Getting started

Package details

Bioconductor views GeneExpression GeneSetEnrichment GeneTarget Pathways miRNA
LicenseMIT + file LICENSE
URL https://github.com/pouryany/PanomiR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
pouryany/PanomiR documentation built on May 13, 2022, 5:14 a.m.