jackKnifeBase: Outputs a table with col x (miRNA), probability of observing...

In pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways

Outputs a table with col x (miRNA), probability of observing k (depending on methodology) against a random distribution with jack-knifing of the pathway cluster (removing a pathway at a time)

Description

Outputs a table with col x (miRNA), probability of observing k (depending on methodology) against a random distribution with jack-knifing of the pathway cluster (removing a pathway at a time)

Usage

jackKnifeBase(
  selector,
  pathways,
  enrichNull,
  fn,
  jackKnifeData,
  m,
  numCores = 1
)

Arguments

selector	Table with x(miRNA) in pathway cluster and observed k (depending on methodology).
pathways	Pathways in pathway cluster.
enrichNull	Enrichment dataset with x (miRNA), y (pathway) and pval (probability of observing x in pathway cluster).
fn	Methodology function.
jackKnifeData	Random distribution data with jack-knifing (i.e. one less pathway)
m	method name
numCores	number of cores

Value

Outputs a new selector table with col x, pval_jk

pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.