clusterPlot: Plots clusters of pathways with associated directionality.

In pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways

Plots clusters of pathways with associated directionality.

Description

Plots clusters of pathways with associated directionality.

Usage

clusterPlot(
  subNet,
  subplot = FALSE,
  topClusters = 2,
  prefix = "",
  outDir = ".",
  plotSave = TRUE
)

Arguments

subNet	pathways network (edge list of pathways)
subplot	if TRUE, store individual clusters plots and connected plots in Figures directory of plots
topClusters	plot figures for top x clusters
prefix	add prefix to plots
outDir	output directory
plotSave	saves the plot if set true. Otherwise display

Value

a set of plots for DE-PCXN and subclusters

Examples

data(miniTestsPanomiR)
clusterPlot(miniTestsPanomiR$miniPathClusts$DE_PCXN, plotSave = FALSE)

pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.