miniTestsPanomiR: Readouts and datasets for minimal reproducible examples of...

In pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways

Readouts and datasets for minimal reproducible examples of the PanomiR.

Description

The item miniEnrich is a reduced representation of the TargetScan For full table use miRNAPathwayEnrichment function in the package along with msigdb_c2 and targetScan_03 datasets.

Usage

data(miniTestsPanomiR)

Format

A list of 5:

mini_LIHC_Exp

a reduced expression dataset from TCGA LIHC data

mini_LIHC_Cov

a reduced covariates dataset from TCGA LIHC data

miniEnrich

a reduced table of miRNA-pathway enrichment, TargetScan.

miniDEP

Differentially activated pathways from reduced TCGA LIHC

miniPCXN

reduced representation of PCXN network

miniPathClusts

miniDEP mapped to miniPCXN

Details

These datasets include reduced representation of TCGA LIHC data for reproducing the pipeline. doi: 10.1016/j.cell.2017.05.046

A reduced representation of PCxN is provided. For full dataset and method please refer to pcxn.org or https://doi.org/10.1371/journal.pcbi.1006042

Examples

data(miniTestsPanomiR)

pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.