tableFromGSC: Pathway-Gene Associations from GeneSet collections
In pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways
tableFromGSC R Documentation
Pathway-Gene Associations from GeneSet collections
Description
This function enables to utilize MSigDB packages and GSEABase objects
to incorporate customized genesets into PanomiR.
Usage
tableFromGSC(gsCollection, fromType = "ENTREZID", toType = "ENSEMBL")
Arguments
gsCollection
An GSEABase gene set collection object
fromType
gene annotation type used in your input data
toType
gene annotation type to be produced in the output
Value
A table of pathway-gene associations
Examples
data(gscExample)
tableFromGSC(gscExample)
pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| tableFromGSC | R Documentation |
Pathway-Gene Associations from GeneSet collections
Description
This function enables to utilize MSigDB packages and GSEABase objects to incorporate customized genesets into PanomiR.
Usage
tableFromGSC(gsCollection, fromType = "ENTREZID", toType = "ENSEMBL")
Arguments
gsCollection |
An GSEABase gene set collection object |
fromType |
gene annotation type used in your input data |
toType |
gene annotation type to be produced in the output |
Value
A table of pathway-gene associations
Examples
data(gscExample) tableFromGSC(gscExample)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.