pcxnToNet: Creates a network out of pcxn table
In pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways
pcxnToNet R Documentation
Creates a network out of pcxn table
Description
Creates a network out of pcxn table
Usage
pcxnToNet(pcxn, edgeFDR, correlationCutOff, weighted)
Arguments
pcxn
pathways network edge list of pathways
edgeFDR
FDR threshold for pathway-pathway adjusted p-values;
filter edges with adjusted p-values less than given threshold
correlationCutOff
cut-off threshold for pathway-pathway correlation;
filter pathways with correlation less than given threshold
weighted
True if you wish to include correlation weights in clustering
Value
enrichment analysis results
pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.
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| pcxnToNet | R Documentation |
Creates a network out of pcxn table
Description
Creates a network out of pcxn table
Usage
pcxnToNet(pcxn, edgeFDR, correlationCutOff, weighted)
Arguments
pcxn |
pathways network edge list of pathways |
edgeFDR |
FDR threshold for pathway-pathway adjusted p-values; filter edges with adjusted p-values less than given threshold |
correlationCutOff |
cut-off threshold for pathway-pathway correlation; filter pathways with correlation less than given threshold |
weighted |
True if you wish to include correlation weights in clustering |
Value
enrichment analysis results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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