samplingDataBase: Outputs a table of sampling data(rows are miRNA and cols are...

In pouryany/PanomiR: Detection of miRNAs that regulate interacting groups of pathways

Outputs a table of sampling data(rows are miRNA and cols are samples)

Description

Outputs a table of sampling data(rows are miRNA and cols are samples)

Usage

samplingDataBase(
  enrichNull,
  selector,
  sampRate,
  fn,
  nPaths,
  samplingDataFile,
  jackKnife = FALSE,
  saveSampling,
  numCores = 1,
  autoSeed = TRUE
)

Arguments

enrichNull	Enrichment dataset with x (miRNA), y (pathway) and pval (probability of observing x in pathway cluster).
selector	Table with x(miRNA) in pathway cluster.
sampRate	Sampling rate.
fn	Methodology function.
nPaths	Number of pathways in pathway cluster.
samplingDataFile	If file exists, load. Else, perform random sampling
jackKnife	If TRUE, conduct sampling with one less pathway, used for jack knifing
saveSampling	If TRUE, data is saved.
numCores	number of cores used
autoSeed	random permutations are generated based on predetermined seeds. TRUE will give identical results in different runs.

Value

Outputs of sampling data.

pouryany/PanomiR documentation built on Aug. 20, 2022, 11:17 p.m.