IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Package details

AuthorSurajit Bhattacharya and Daniel Cox
Bioconductor views GeneExpression GenePrediction GeneTarget Microarray Software StatisticalMethod
MaintainerSurajit Bhattacharya <[email protected]>
LicenseGPL-2
Version1.8.0
URL https://github.com/sbhattacharya3/IntramiRExploreR/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("IntramiRExploreR")

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IntramiRExploreR documentation built on Oct. 31, 2019, 8:58 a.m.